[BioC] snapCGH: T instead of TRUE, etc

[Ramon Diaz-Uriarte]

Sorry, I forgot to say I am seeing this with versions 1.2.0 (BioC 1.9) and 
1.3.2 (BioC 2.0) of snapCGH (R-2.4., under Debian GNU/Linux).

R.

On Friday 16 March 2007 14:29, Ramon Diaz-Uriarte wrote:
> Dear All,
>
> Somewhat similar to what I reported before, with snapCGH I am getting
> errors, when building a package, that can be traced to errors in snapCGH.
> Specifically:
>
> The functions "find.param.{two.three..}" lead to errors such as
>
> Error in matrix(c(1 - p1, p1, p2, 1 - p2), ncol = 2, b = T) :
>          T used instead of TRUE
> Error in matrix(c(1 - p1, p1, p2, 1 - p2), ncol = 2, b = T) :
>          recursive default argument reference
>
>
>
>
> And the functions Viterbi.{two.three..} also show similar problems, as in
>
> Error in matrix(nrow = K, ncol = n, b = T) :
>          T used instead of TRUE
> Error in matrix(nrow = K, ncol = n, b = T) :
>          recursive default argument referenc
>
> max(-1e+05, log(BFGS.output$prior[i]), na.rm = T)
>          T used instead of TRUE
>
>
>
>
> Once all the appropriate T are replaced by TRUE things are OK again.
>
>
>
> Best,
>
>
> R.

-- 
Ramón Díaz-Uriarte
Statistical Computing Team
Centro Nacional de Investigaciones Oncológicas (CNIO)
(Spanish National Cancer Center)
Melchor Fernández Almagro, 3
28029 Madrid (Spain)
Fax: +-34-91-224-6972
Phone: +-34-91-224-6900

http://ligarto.org/rdiaz
PGP KeyID: 0xE89B3462
(http://ligarto.org/rdiaz/0xE89B3462.asc)



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