[BioC] snapCGH: T instead of TRUE, etc

[Ramon Diaz-Uriarte]

Dear All,

Somewhat similar to what I reported before, with snapCGH I am getting errors, 
when building a package, that can be traced to errors in snapCGH. 
Specifically:

The functions "find.param.{two.three..}" lead to errors such as

Error in matrix(c(1 - p1, p1, p2, 1 - p2), ncol = 2, b = T) : 
         T used instead of TRUE
Error in matrix(c(1 - p1, p1, p2, 1 - p2), ncol = 2, b = T) : 
         recursive default argument reference




And the functions Viterbi.{two.three..} also show similar problems, as in

Error in matrix(nrow = K, ncol = n, b = T) : 
         T used instead of TRUE
Error in matrix(nrow = K, ncol = n, b = T) : 
         recursive default argument referenc

max(-1e+05, log(BFGS.output$prior[i]), na.rm = T)
         T used instead of TRUE




Once all the appropriate T are replaced by TRUE things are OK again.



Best,


R.



-- 
Ramón Díaz-Uriarte
Statistical Computing Team
Centro Nacional de Investigaciones Oncológicas (CNIO)
(Spanish National Cancer Center)
Melchor Fernández Almagro, 3
28029 Madrid (Spain)
Fax: +-34-91-224-6972
Phone: +-34-91-224-6900

http://ligarto.org/rdiaz
PGP KeyID: 0xE89B3462
(http://ligarto.org/rdiaz/0xE89B3462.asc)



**NOTA DE CONFIDENCIALIDAD** Este correo electrónico, y en s...{{dropped}}