[BioC] time series analysis

Gordon Smyth smyth at wehi.EDU.AU
Sun Mar 4 09:49:42 CET 2007

Dear Ozge,

See Section 8.8 (Time Series Analysis) of the limma package User's 
Guide. I'm not sure how convenient you'll find it if you are a 
beginning user, but the example treated in the user's guide seem 
match your experiment very closely.

Best wishes

>Date: Wed, 28 Feb 2007 15:10:08 +0200
>From: Ozge Gursoy-Yuzugulu <sehriban at bilkent.edu.tr>
>Subject: [BioC] time series analysis
>To: bioconductor at stat.math.ethz.ch
>Message-ID: <a06230900c20b2e547aa7@[]>
>Content-Type: text/plain; charset="us-ascii" ; format="flowed"
>I am working on 2 isogenic cell lines which are treated with a
>certain chemical and 24h, 48h, and 72 hour samples are taken. We now
>have 12 arrays (4x 3 time points) and its duplicate. I searched for
>some methods for the analysis of this kind of data, yet I could not
>find one.
>Could you please advise me the most convenient R package and
>statistical method to perform such an analysis...
>Thank you all,

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