[BioC] ABPkgBuilder trouble

[Nianhua Li]

Hi, Johan,

A couple of questions/suggestions and one offer:

1. You mentioned that you have tried AnnBuilder on two windows
computers. Could you try just the perl script I sent to you in my last
email and tell me the result?

2. Did you see the perl warning about locale warning when you ran the
perl script on your mac machine? I gooled the warning and found this
http://www.xav.com/perl/lib/Pod/perllocale.html . May be fixing the
locale can help?

3. I am not a perl expert but I know a bit about AnnBuilder. I am
sorry that I can't help you much on the perl problem. But I can build
the annotation package for you if you could send me (offline) your
base file and the script you used to invoke AnnBuilder. I  have a
snapshot of all the source data (GO, KEGG, Entrez, etc) for release
1.9, the upcoming release 2.0. I can build annotation package with
either one of them or just use the most up-to-date data online. Please
let me know which one you perfer to.

best

nianhua