[BioC] crlmm warning

[Benilton Carvalho]

Hi Morten,

the 'safe' versions will become available with BioC 2.0.

My question, regarding the email you send next (about using  
makePlatformDesign for SNP arrays), that's not required anymore. All  
you need is in that oligoAddOns.tar.gz. All you need to do is install  
the packages and use the latest oligo.

Let me know how things go,

b

On Mar 7, 2007, at 5:45 AM, Morten Mattingsdal wrote:

> Hello everyone,
>
> Ive managed to get the oligo package and the crlmm function up and
> running. Ive also installed the meta-data libraries from this URL
> http://www.biostat.jhsph.edu/~bcarvalh/oligoAddOns.tar.gz
> provided by Benliton
>
> but when I run the commands:
>
>> files <- list.celfiles()
>> snpFSet <- read.celfiles(files)
>>
>> Welcome to the pd.Mapping250K_Nsp prototype pdInfo package
>> WARNING: DO NOT USE THIS PACKAGE FOR ANY ANALYSIS.
>> THIS PACKAGE IS FOR INTERFACE PROTOTYPE USE ONLY!
>> THE DATA HAS NOT BEEN VALIDATED AND LIKELY HAS ERRORS.
>> Have fun!
>
> Im am happy that this information is warning me, but to my point:
> - When will the "safe" mapping libraries come?
> - Can I build this by myself ?
>
> I want to compare brlmm from Affymetrix and crlmm from BioC genotype
> calls for my data
>
> regards
> morten
>
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