[BioC] solution of boot.phylo()'s problem

Nora Muda noramuda at yahoo.com
Thu Mar 22 03:15:46 CET 2007

Thank you to Martin and Earl for their response and

I got answered from Emmanuel Paradis. Below are the


x is a character matrix (not the distance matrix) that
will be resampled for the bootstrap. 

My mistake is not to store the tree which is needed by
boot.phylo; so
 tr <- nj(distallbacteria)



We also can refer to the book on using R for
phylogenetic analyses, written by Emmanuel Paradis :



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