[BioC] acgh process problem

[Daniel Brewer]

Hello,

I am having a problem with the "aCGH.process" function of the "aCGH"
library"

> ex.acgh <- aCGH.process(ex.acgh)

Averaging duplicated clones
0        46 48 64 169 243 273 296 298 322 355 478 480 502 505 589 602
628 709 776 843 975 1005 1148 1203 1243 1392 1393 1423 1627 1641 1684
1734 1756 1812 1839 1951 1992 2062 2066 2067 2178 2232 2333 2342 2359
2360 2363 2423 2426 2483 2501 2550 2700 2772 2793 2805 2821 2823 2827
2840 2989 3013 3034 3095 3141 3184 3310 3470 3479 3529 3562 3644 3647
3860 3872 3936 3953 4009 4105 4136 4148 4203 4270 4302 4306 4344 4384
4396 4424 4425 4464 4478 4493 4535 4690 4694 4714 4722 4762 4776 4789
4795 4892 4935 4998 5190 5256 5433 5461 5662 5703 5755 5850 5912 5949
5968 5988 6004 6033 6091 6137 6360 6368 6496 6552 6554 6579 6825 6937
7041 7111 7122 7320 7428 7466 7492 7531 7568 7596 7613 7651 7731 7774
7817 7827 7837 7933 7944 8061 8070 8105 8174 8182 8250 8320 8462 8643
8669 8740 8902 8932 8956 9187 9214 9240 9296 9325 9356 9385 9402 9410
9458 9548 9650 9793 9815 9836 9925 9977 9992 10040 10051 10128 10204
10312 10332 10514 10540 10599 10846 10866 10885 10898 10910 10966 11030
11097 11158 11196 11348 11428 11440 11536 11608 11651 11668 11670 11672
11904 11941 12019 12028 12038 12049 12059 12086 12122
Error in `[<-.data.frame`(`*tmp*`, ind1[j], , drop = FALSE, value =
c(0.00990074895981025,  : unused argument(s) (drop = FALSE)

I have used the same dataset with "snapCGH" library without a problem.

Any ideas?

-- 
**************************************************************

Daniel Brewer, Ph.D.
Institute of Cancer Research
Email: daniel.brewer at icr.ac.uk

**************************************************************

The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.

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