[BioC] Failing to install genefilter-1.12.0

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Hi Benilton,

Make sure that you have the libstdc++ _and_ the libstdc++-devel RPMs
installed on your Red Hat system.
On my SuSE 10.2 system, the exact names for those RPMs are
  libstdc++41
  libstdc++41-devel
The c++config.h file is included in the libstdc++41-devel RPM.

Cheers,
H.

Benilton Carvalho wrote:
> Hi everyone,
> 
> I just built from the source R-2.4.1, so it's a "brand new" installation.
> 
> Then:
> 
> source("http://www.bioconductor.org/bioLite.R")
> biocLite(c("simpleaffy", "affyPLM", "RColorBrewer"))
> 
> everything goes almost OK: I can't get genefilter to install (therefore I 
> don't have simpleaffy)
> 
> It's a long output that I get, but it starts with:
> 
> In file included from 
> /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/vector:67,
>                   from half_range_mode.cpp:4:
> /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/stl_algobase.h:64:28: 
> bits/c++config.h: No such file or directory
> In file included from 
> /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/vector:68,
>                   from half_range_mode.cpp:4:
> /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: 
> error: expected template-name before '<' token
> /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: 
> error: expected `{' before '<' token
> /usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: 
> error: expected unqualified-id before '<' token
> 
> 
> Have anyone observed something like this?
> 
> thanks,
> 
> b.
> 
> --
> 
>> sessionInfo()
> R version 2.4.1 (2006-12-18)
> x86_64-unknown-linux-gnu
> 
> locale:
> LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=en_US.iso885915;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] "stats"     "graphics"  "grDevices" "utils"     "datasets"  "methods"
> [7] "base"
> 
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