[BioC] globaltest

[J.Oosting at lumc.nl]

If the files contain a single column of geneids you can try the
following
pathway1<-read.table("Immune-associated-probesetids.txt",as.is=TRUE)[[1]
]
pathway2<-read.table("Inflammatory
response-associated-probesetids.txt",as.is=TRUE)[[1]] 

Jan Oosting

> examplesX<-as.matrix(read.table("normalisedresulttable6reps.tx
> t",header=TRUE)) 
> 
> examplesY<-c("WT","MT","WT","MT","WT","MT")
> pathway1<-as.vector(read.table("Immune-associated-probesetids.txt"))
> pathway2 <- as.vector(read.table("Inflammatory
> response-associated-probesetids.txt"))
> lst <- list(Probes.immune=(pathway1),Probes.Inflammation=(pathway2))