[BioC] multtest

[M Perez]

Hi,

I think you could try to average your replicates and
after that perform the paired test. 

hth
Manuel
--- Ozge Gursoy-Yuzugulu <sehriban at bilkent.edu.tr>
escribió:

> hi,
> 
> I am using "multtest" to analyze my data. Data
> consisit of 2 groups 
> with 3 different conditions in each with 2
> repllicates. I encounter 
> with the following error.
> 
> n = read.csv("G2vs2215minus.csv")
> >  dim(n)
> [1] 54675    13
> >  m = n[,2:13]
> >  nlabel = c(0,0,1,1,0,0,1,1,0,0,1,1)
> >  tmp <- mt.teststat.num.denum(m, nlabel, test =
> "pairt")
> Error in mt.checkclasslabel(classlabel, test) :
> 	Some errors in specifying classlabel for the paired
> t test 
> for the block 1 located at ( 1 2 )
>   your classlabel= 0
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 0
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 1
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 1
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 0
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 0
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 1
> Some errors in specifying classlabel for the paired
> t test for the 
> block 1 located at ( 1 2 )
>   your classlabel= 1
> Some errors in specifying cla
> 
> what should I do, to do a pair T test with 2
> replicates of data.
> 
> 
> thank you all 
> 	[[alternative HTML version deleted]]
> 
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