April 2005 Archives by author

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Starting: Fri Apr 1 00:58:48 CEST 2005
Ending: Sat Apr 30 20:49:04 CEST 2005
Messages: 420

• [BioC] error messages when opening R   Ting-Yuan Liu (FHCRC)
• [BioC] gcrma problem under Debian   Ting-Yuan Liu (FHCRC)
• [BioC] where to start?   michael watson (IAH-C)
• [BioC] where to start?   michael watson (IAH-C)
• [BioC] MAGE-ML reading   Vincent Carey 525-2265
• [BioC] RSJava on Windows   Vincent Carey 525-2265
• [BioC] Using perl in R   Vincent Carey 525-2265
• [BioC] Integrating Codelink data with bioconductor (using affy and limmafunctions)   Diego Díez Ruiz
• [BioC] Integrating Codelink data with bioconductor (using affyand limmafunctions)   Diego Díez Ruiz
• [BioC] Integrating Codelink data with bioconductor (using affyand limmafunctions)   Diego Díez Ruiz
• [BioC] Single Channel Analysis in Limma using lmscFit   Brett Abrahams
• [BioC] NetAffx annotation order conflicts with RMA   Marie Chehani Alles
• [BioC] loged data or not loged previous to use normalize.quantile   Naomi Altman
• [BioC] Tiling array application   Naomi Altman
• [BioC] Detection calls - non-Affy (was "loged data or not loged")   Naomi Altman
• [BioC] loged data or not loged previous to use normalize.quantile   Naomi Altman
• [BioC] loged data or not loged previous to use normalize.quantile   Naomi Altman
• [BioC] reproducing dChip expression measure   Naomi Altman
• [BioC] Clustering non-biological replicate chips   Naomi Altman
• [BioC] Pearson correlation and p-values for a matrix   Naomi Altman
• [BioC] RMA + loess normalisation and filtering   Naomi Altman
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Naomi Altman
• [BioC] genes variances   Naomi Altman
• [BioC] expanding factors for lm   Arne.Muller at sanofi-aventis.com
• [BioC] Cannot install Bioconductor   Jonathan Arthur
• [BioC] Multifactorial affy data   Jonathan Arthur
• [BioC] probe level analysis of Nimblegen arrays   Mikko Arvas
• [BioC] is-normalisation-really-required   Gordon Barr
• [BioC] Error loading 'affy' / 'reposTools'   Belooussov, Anton
• [BioC] FW: Error loading 'affy' / 'reposTools'   Belooussov, Anton
• [BioC] FW: Error loading 'affy' / 'reposTools'   Belooussov, Anton
• [BioC] A question regarding the mean of M-values.   Henrik Bengtsson
• [BioC] affy SNP chips   Dick Beyer
• [BioC] possible problems with call.exprs for mas, mas-R, and justPlier   Dick Beyer
• [BioC] Re: possible problems with call.exprs for mas, mas-R, and justPlier   Dick Beyer
• [BioC] Error in initialize   Soumyaroop Bhattacharya
• [BioC] Quantile normalization without using affyBatch   Ben Bolstad
• [BioC] help on cdf file   Ben Bolstad
• [BioC] SpikeIn and rma, MAS5 and dChip   Ben Bolstad
• [BioC] Bioconductor or R courses   Brooke-Powell, Elizabeth
• [BioC] limma topTable question   Jenny Bryan
• [BioC] Siggenes SAM analysis with unequal # of control and exp chips   Stefano Calza
• [BioC] gcrma problem under Debian   Stefano Calza
• [BioC] Non parametric control chart   Carla
• [BioC] limma package   Costa Catalana
• [BioC] gcrma problem   Wenqiong Chen
• [BioC] gcrma problem   Wenqiong Chen
• [BioC] remove probes - GCRMA 1.1.3 weird behavior   Ariel Chernomoretz
• [BioC] remove probes - code   Ariel Chernomoretz
• [BioC] remove probes - example script   Ariel Chernomoretz
• [BioC] Detection call for Hu6800   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] problem with getGOOntology   Sean Cory
• [BioC] problem with getGOOntology   Sean Cory
• [BioC] how to do with global shift   Dapeng Cui
• [BioC] affy quality analysis   Dansen, Ing. M.C.
• [BioC] Strange signal Log-Ratios with MA.RG   Sean Davis
• [BioC] MAGE-ML reading   Sean Davis
• [BioC] limma topTable question   Sean Davis
• [BioC] limma topTable question   Sean Davis
• [BioC] probe alignment clustering   Sean Davis
• [BioC] Questions about limma   Sean Davis
• [BioC] Questions about limma   Sean Davis
• [BioC] problem with getGOOntology   Sean Davis
• [BioC] problem with getGOOntology   Sean Davis
• [BioC] Eisen-formatted expression data   Sean Davis
• [BioC] is-normalisation-really-required   Sean Davis
• [BioC] is-normalisation-really-required   Sean Davis
• [BioC] retrieve raw data from soft file   Sean Davis
• [BioC] where to start?   Sean Davis
• [BioC] where to start?   Sean Davis
• [BioC] Multifactorial affy data   Sean Davis
• [BioC] Pointers on importing peptide (protein) expression data   Sean Davis
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Sean Davis
• [BioC] multtest problem...   Sean Davis
• [BioC] limma and files with separate channels   Sean Davis
• [BioC] affy_1.5.8-1.zip affy.pdf missing under Release 1.5   Marcus Davy
• [BioC] affy_1.5.8-1.zip affy.pdf missing under Release 1.5   Marcus Davy
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I gotEXCITINGresults, what could be the logic, since i h   Marcus Davy
• [BioC] loged data or not loged previous to use normalize.quantile   Rhonda DeCook
• [BioC] How to analysis the this kind of data set?   Rhonda DeCook
• [BioC] Rdbi.PgSQL   Hrishikesh Deshmukh
• [BioC] PID,x,y   Hrishikesh Deshmukh
• [BioC] LimmaGUI discards spots with no signal on one channel?   Ramon Diaz-Uriarte
• [BioC] Wilcoxon test [was loged data or not loged previous to use normalize.quantile]   Ramon Diaz-Uriarte
• [BioC] LimmaGUI discards spots with no signal on one channel?   Ramon Diaz-Uriarte
• [BioC] help with Limma   Ilhem Diboun
• [BioC] biomaRt question   Steffen Durinck
• [BioC] genes variances   E Motakis, Mathematics
• [BioC] MAplot   Mohammad Esad-Djou
• [BioC] MAplot   Mohammad Esad-Djou
• [BioC] convert a Binary CEL file to txt   Mohammad Esad-Djou
• [BioC] SpikeIn and rma, MAS5 and dChip   Mohammad Esad-Djou
• [BioC] Bioconductor and R_LIBS   Seth Falcon
• [BioC] limma package : Error in sigToEnv(signature,fdef) : Tr ying to get slot "signature" from an object of a basic class ("NULL") wit h no slots   Seth Falcon
• [BioC] Rgraphviz error   Seth Falcon
• [BioC] bioconductor affy lib with R 2.0.1   Seth Falcon
• [BioC] Rgraphviz error   Seth Falcon
• [BioC] bioconductor affy lib with R 2.0.1   Seth Falcon
• [BioC] bioconductor affy lib with R 2.0.1   Seth Falcon
• [BioC] Bioconductor or R courses   Seth Falcon
• [BioC] no BioConductor posting guide   Seth Falcon
• [BioC] (no subject)   Seth Falcon
• [BioC] ANN: Bioconductor short course June 1-3 in Seattle   Seth Falcon
• [BioC] ANN: Bioconductor short course June 1-3 in Seattle   Seth Falcon
• [BioC] makecdfenv error   Seth Falcon
• [BioC] tcltk problems   Seth Falcon
• [BioC] tcltk problems   Seth Falcon
• [BioC] Cannot install Bioconductor   Seth Falcon
• [BioC] *.Rd question concerning special characters   Seth Falcon
• [BioC] where to start?   Seth Falcon
• [BioC] Re: Rghraphviz   Seth Falcon
• [BioC] affy_1.5.8-1.zip affy.pdf missing under Release 1.5   Seth Falcon
• [BioC] affy_1.5.8-1.zip affy.pdf missing under Release 1.5   Seth Falcon
• [BioC] FW: Error loading 'affy' / 'reposTools'   Seth Falcon
• [BioC] ReadAffy for moe430acdf   Seth Falcon
• [BioC] ReadAffy for moe430acdf   Seth Falcon
• [BioC] Are you a Bioc package maintainer?   Seth Falcon
• [BioC] Using perl in R   Seth Falcon
• [BioC] R and BioC package installation   Seth Falcon
• [BioC] error messages when opening R   Seth Falcon
• [BioC] Error loading some BioC packages !   Seth Falcon
• [BioC] simLL method in GOstats   Seth Falcon
• [BioC] Using perl in R   Shafagh Fallah
• [BioC] R and BioC package installation   Gregor GORJANC
• [BioC] R and BioC package installation   Gregor GORJANC
• [BioC] R and BioC package installation   Gregor GORJANC
• [BioC] ReadAffy for moe430acdf   Margaret Gardiner-Garden
• [BioC] problem with getGOOntology   Robert Gentleman
• [BioC] problem with getGOOntology   Robert Gentleman
• [BioC] Cannot install Bioconductor   Robert Gentleman
• [BioC] ALL dataset by Chiaretti et al.   Robert Gentleman
• [BioC] (no subject)   Robert Gentleman
• [BioC] genes variances   Robert Gentleman
• [BioC] Error loading 'affy' / 'reposTools'   Robert Gentleman
• [BioC] simLL method in GOstats   Robert Gentleman
• [BioC] R and BioC package installation   Jeff Gentry
• [BioC] Strange signal Log-Ratios with MA.RG   Giulio Di Giovanni
• [BioC] Strange signal Log-Ratios with MA.RG   Giulio Di Giovanni
• [BioC] Error loading some BioC packages !   Giulio Di Giovanni
• [BioC] Error loading some BioC packages !   Giulio Di Giovanni
• [BioC] annaffy annotation problem (hgu133plus2)   Glynn, Earl
• [BioC] Quantile normalization without using affyBatch   Suresh Gopalan
• [BioC] is-normalisation-really-required   Gorjanc Gregor
• [BioC] is-normalisation-really-required   Gorjanc Gregor
• [BioC] affy quality analysis   Paul Grosu
• [BioC] linear models and intercepts with LIMMA   Ramsi Haddad
• [BioC] linear models and intercepts with LIMMA   Ramsi Haddad
• [BioC] multtest and Cox regression   Benjamin Haibe-Kains
• [BioC] multtest and Cox regression   Benjamin Haibe-Kains
• [BioC] Cy3 Cy5 mixup?   Matthew Hannah
• [BioC] Wilcoxon test [was loged data or not loged previous to use normalize.quantile]   Matthew Hannah
• [BioC] no BioConductor posting guide   Matthew Hannah
• [BioC] how to keep R as the latest version in the simple way?   Kasper Daniel Hansen
• [BioC] problem deriving expression values   Kasper Daniel Hansen
• [BioC] loged data or not loged previous to use normalize.quantile   Kasper Daniel Hansen
• [BioC] Tiling array application   Kasper Daniel Hansen
• [BioC] limma topTable question   Kasper Daniel Hansen
• [BioC] no BioConductor posting guide   Kasper Daniel Hansen
• [BioC] reproducing dChip expression measure   Kasper Daniel Hansen
• [BioC] Another tcltk problem   Kasper Daniel Hansen
• [BioC] no BioConductor posting guide   Kasper Daniel Hansen
• [BioC] error in genefilter?   Kasper Daniel Hansen
• [BioC] R and BioC package installation   Kasper Daniel Hansen
• [BioC] limma topTable question   Cyrus Harmon
• [BioC] limma topTable question   Cyrus Harmon
• [BioC] limma topTable question   Cyrus Harmon
• [BioC] drosophila2 source question   Cyrus Harmon
• [BioC] drosophila2 source question   Cyrus Harmon
• [BioC] Cy3 Cy5 mixup?   Dennis Hazelett
• [BioC] Questions about limma   He, Yiwen (NIH/CIT)
• [BioC] Questions about limma   He, Yiwen (NIH/CIT)
• [BioC] limma package : Error in sigToEnv(signature, fdef) : Trying to ge t slot "signature" from an object of a basic class ("NULL") with no slots   He, Yiwen (NIH/CIT)
• [BioC] limma package : Error in sigToEnv(signature,fdef) : Tr ying to get slot "signature" from an object of a basic class ("NULL") wit h no slots   He, Yiwen (NIH/CIT)
• [BioC] limma package : Error in sigToEnv(signature,fdef) : Tr ying to get slot "signature" from an object of a basic class ("NULL") wi t h no slots   He, Yiwen (NIH/CIT)
• [BioC] How does limma handle missing values?   He, Yiwen (NIH/CIT)
• [BioC] problem with impute.knn in the impute package   He, Yiwen (NIH/CIT)
• [BioC] Read PDB files   Burkhard Heil
• [BioC] is-normalisation-really-required   Stephen Henderson
• [BioC] Job: Statistical Analyst - Affymetrix, Inc.   Higgs, Debi
• [BioC] Jobs: Post-doctoral research in Statistical Genomics, Oxford University   Chris Holmes
• [BioC] loged data or not loged previous to use normalize.quantile   Fangxin Hong
• [BioC] ath11 annotation files   Fangxin Hong
• [BioC] How to analysis the this kind of data set?   Fangxin Hong
• [BioC] ANN: Bioconductor short course June 1-3 in Seattle   Fangxin Hong
• [BioC] Genes with Low-expression   Fangxin Hong
• [BioC] Memory issue   Wolfgang Huber
• [BioC] Strange signal Log-Ratios with MA.RG   Wolfgang Huber
• [BioC] loged data or not loged previous to use normalize.quantile   Wolfgang Huber
• [BioC] loged data or not loged previous to use normalize.quantile   Wolfgang Huber
• [BioC] Re: Detection calls - non-Affy (was "loged data or not loged")   Wolfgang Huber
• [BioC] RMA + loess normalisation and filtering   Wolfgang Huber
• [BioC] RMA + loess normalisation and filtering   Wolfgang Huber
• [BioC] multtest problem...   Wolfgang Huber
• [BioC] tcltk problems   Vsevolod (Simon) Ilyushchenko
• [BioC] tcltk problems   Vsevolod (Simon) Ilyushchenko
• [BioC] tcltk problems   Vsevolod (Simon) Ilyushchenko
• [BioC] Another tcltk problem   Vsevolod (Simon) Ilyushchenko
• [BioC] Another tcltk problem   Vsevolod (Simon) Ilyushchenko
• [BioC] Detection calls - non-Affy (was "loged data or not loged")   Rafael A. Irizarry
• [BioC] LimmaGUI discards spots with no signal on one channel??   J.delasHeras at ed.ac.uk
• [BioC] LimmaGUI discards spots with no signal on one channel?   J.delasHeras at ed.ac.uk
• [BioC] Help for GI numbers acess from LLids ? and How BioC will handle LocusLink?   Saurin Jani
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Saurin Jani
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Saurin Jani
• [BioC] Thank you for guidance, I highly appreciate that   Saurin Jani
• [BioC] Re: Fw: problem with GEO parser   Saurin D. Jani
• [BioC] help on cdf file   Jianping Jin
• [BioC] RNA deg plot   Jianping Jin
• [BioC] RNA deg plot   Jianping Jin
• [BioC]   Piotr K
• [BioC] loged data or not loged previous to use normalize.quantile   Marcelo Luiz de Laia
• [BioC] loged data or not loged previous to use normalize.quantile   Marcelo Luiz de Laia
• [BioC] lmFit: how method I use in non-Affy single channel   Marcelo Luiz de Laia
• [BioC] How extract F.p.value and lods values from a eBayes object in limma???   Marcelo Luiz de Laia
• [BioC] How extract F.p.value and lods values from a eBayes object in limma???   Marcelo Luiz de Laia
• [BioC] error with plot in simpleaffy   Larry.Lapointe at csiro.au
• [BioC] error with plot in simpleaffy   Larry.Lapointe at csiro.au
• [BioC] Cho et al.'s Expression Dataset in Yeast   Ho-Joon Lee
• [BioC] no BioConductor posting guide   Liaw, Andy
• [BioC] A question regarding the mean of M-values.   Johan Lindberg
• [BioC] Tiling array application   James MacDonald
• [BioC] affy SNP chips   James MacDonald
• [BioC] gcrma problem   James MacDonald
• [BioC] Re: justGCRMA and binary .CDF file   James MacDonald
• [BioC] drosophila2 source question   James MacDonald
• [BioC] convert a Binary CEL file to txt   James MacDonald
• [BioC] solicitation for Affy bovine cdf environment   James MacDonald
• [BioC] Memory issue   James W. MacDonald
• [BioC] Binary CDF file   James W. MacDonald
• [BioC] Binary CDF file   James W. MacDonald
• [BioC] limma package : Error in sigToEnv(signature, fdef) : Trying to ge t slot "signature" from an object of a basic class ("NULL") with no slots   James W. MacDonald
• [BioC] limma package : Error in sigToEnv(signature,fdef) : Tr ying to get slot "signature" from an object of a basic class ("NULL") wit h no slots   James W. MacDonald
• [BioC] Linear response gene selection techniques   James W. MacDonald
• [BioC] Puzzled with htmlpage   James W. MacDonald
• [BioC] SNPs tool ???   James W. MacDonald
• [BioC] makecdfenv error   James W. MacDonald
• [BioC] linear models and intercepts with LIMMA   James W. MacDonald
• [BioC] exprSet   James W. MacDonald
• [BioC] multtest and Cox regression   James W. MacDonald
• [BioC] Quantile normalization without using affyBatch   James W. MacDonald
• [BioC] sam analysis question   James W. MacDonald
• [BioC] CDF file for Rhodobacter   James W. MacDonald
• [BioC] U133plus2.0 memory problem   James W. MacDonald
• [BioC] R and BioC package installation   James W. MacDonald
• [BioC] Limma : Problem with lmFit() and block   Laetitia Marisa
• [BioC] Wilcoxon test [was loged data or not loged previous to use normalize.quantile]   Claus Mayer
• [BioC] convert dat to cel files   Auer Michael
• [BioC] covariance structures for limma   Jacob Michaelson
• [BioC] covariance structures for limma   Jacob Michaelson
• [BioC] qc.affy problem   Crispin Miller
• [BioC] bioconductor affy lib with R 2.0.1   Susan J. Miller
• [BioC] Eisen-formatted expression data   Steffen Moeller
• [BioC] Puzzled with htmlpage   Fatima Nunez
• [BioC] technical replicates and spots in limma   Ron Ophir
• [BioC] technical replicates and spots in limma   Ron Ophir
• [BioC] backgroundCorrect(method="normexp") problems   Palmer, Lance
• [BioC] CDF file for Rhodobacter   Yue Pan
• [BioC] Golub's 1999 article CEL files   Eric Paquet
• [BioC] computing SD using a list of gene expressions   Norman Pavelka
• [BioC] problem with getGOOntology   Francois Pepin
• [BioC] problem with getGOOntology   Francois Pepin
• [BioC] problem with getGOOntology   Francois Pepin
• [BioC] missing AnnBuilder parser   Francois Pepin
• [BioC] missing AnnBuilder parser   Francois Pepin
• [BioC] simLL method in GOstats   Maria Persico
• [BioC] simLL method in GOstats   Maria Persico
• [BioC] Cox MTP question   Katherine Pollard
• [BioC] multtest problem...   Katherine Pollard
• [BioC] ALL dataset by Chiaretti et al.   Heike Pospisil
• [BioC] RMA + loess normalisation and filtering   Katleen De Preter
• [BioC] annaffy annotation problem (hgu133plus2)   Dipl.-Ing. Johannes Rainer
• [BioC] annaffy annotation problem (hgu133plus2)   Dipl.-Ing. Johannes Rainer
• [BioC] annaffy annotation problem (hgu133plus2)   Dipl.-Ing. Johannes Rainer
• [BioC] annaffy annotation problem (hgu133plus2)   Dipl.-Ing. Johannes Rainer
• [BioC] biomaRt question   Dipl.-Ing. Johannes Rainer
• [BioC] biomaRt question   Dipl.-Ing. Johannes Rainer
• [BioC] biomaRt question   Dipl.-Ing. Johannes Rainer
• [BioC] biomaRt question   Dipl.-Ing. Johannes Rainer
• [BioC] biomaRt question   Dipl.-Ing. Johannes Rainer
• [BioC] *.Rd question concerning special characters   Dipl.-Ing. Johannes Rainer
• [BioC] multtest problem...   Dipl.-Ing. Johannes Rainer
• [BioC] multtest problem...   Dipl.-Ing. Johannes Rainer
• [BioC] reproducing dChip expression measure   Adaikalavan Ramasamy
• [BioC] reproducing dChip expression measure   Adaikalavan Ramasamy
• [BioC] no BioConductor posting guide   Adaikalavan Ramasamy
• downloading an entire repository (was Re: [BioC] (no subject))   Adaikalavan Ramasamy
• [BioC] no BioConductor posting guide   Adaikalavan Ramasamy
• [BioC] no BioConductor posting guide   Adaikalavan Ramasamy
• [BioC] opinions on posting guide draft   Adaikalavan Ramasamy
• [BioC] how to do with global shift   Adaikalavan Ramasamy
• [BioC] is-normalisation-really-required   Adaikalavan Ramasamy
• [BioC] no BioConductor posting guide   Adaikalavan Ramasamy
• [BioC] is-normalisation-really-required   Adaikalavan Ramasamy
• [BioC] reproducing dChip expression measure   Adaikalavan Ramasamy
• [BioC] no BioConductor posting guide   Adaikalavan Ramasamy
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Adaikalavan Ramasamy
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Adaikalavan Ramasamy
• [BioC] marray, weights and normalizations..   Henning Redestig
• [BioC] marray, weights and normalizations..   Henning Redestig
• [BioC] marray, weights and normalizations..   Henning Redestig
• [BioC] Error with lmFit   Sara Rollinson
• [BioC] no BioConductor posting guide   A.J. Rossini
• [BioC] no BioConductor posting guide   A.J. Rossini
• [BioC] local pooled error   A.J. Rossini
• [BioC] Wilcoxon test [was loged data or not loged previous to use normalize.quantile]   A.J. Rossini
• [BioC] Memory issue   Salil
• [BioC] problem deriving expression values   Salil
• [BioC] local pooled error   Lana Schaffer
• [BioC] computing SD using a list of gene expressions   Lana Schaffer
• [BioC] error in genefilter?   Lana Schaffer
• [BioC] error messages when opening R   Lana Schaffer
• [BioC] Adaptive background correction error   Anja Schiel
• [BioC] (no subject)   Howard Schumacher
• [BioC] Pearson correlation and p-values for a matrix   Dren Scott
• [BioC] Help on using read.Agilent from marray library   Archana Sharma-Oates
• [BioC] Pointers on importing peptide (protein) expression data   Jamie Sherman
• [BioC] How to analysis the this kind of data set?   Xiao Shi
• [BioC] Tiling array application   Shinhan Shiu
• [BioC] Tiling array application   Shinhan Shiu
• [BioC] Tiling array application   Shinhan Shiu
• [BioC] Tiling array application   Shinhan Shiu
• [BioC] Quantile normalization without using affyBatch   Shinhan Shiu
• [BioC] Quantile normalization without using affyBatch   Shinhan Shiu
• [BioC] Spot quantitation   Jason Skelton
• [BioC] probe alignment clustering   Stan Smiley
• [BioC] MAPlot   Gordon Smyth
• [BioC] Strange signal Log-Ratios with MA.RG   Gordon Smyth
• [BioC] loged data or not loged previous to use normalize.quantile   Gordon Smyth
• [BioC] Adaptive background correction error   Gordon Smyth
• [BioC] limma topTable question   Gordon Smyth
• [BioC] Wilcoxon test [was loged data or not loged previous to use normalize.quantile]   Gordon Smyth
• [BioC] FW: reading imagene data into limma   Gordon Smyth
• [BioC] limma topTable question   Gordon Smyth
• [BioC] How does limma handle missing values?   Gordon Smyth
• [BioC] Question about Correlation (Limma package)   Gordon Smyth
• [BioC] lmFit: how method I use in non-Affy single channel   Gordon Smyth
• [BioC] Single Channel Analysis in Limma using lmscFit   Gordon Smyth
• [BioC] linear models and intercepts with LIMMA   Gordon Smyth
• [BioC] How extract F.p.value and lods values from a eBayes object in limma???   Gordon Smyth
• [BioC] marray, weights and normalizations..   Gordon Smyth
• [BioC] Limma : Problem with lmFit() and block   Gordon Smyth
• [BioC] marray, weights and normalizations..   Gordon Smyth
• [BioC] decideTests and topTable   Gordon Smyth
• [BioC] marray, weights and normalizations..   Gordon Smyth
• How to average over duplicate spots [Was: Re: [BioC] technical replicates and spots in limma]   Gordon Smyth
• [BioC] covariance structures for limma   Gordon Smyth
• [BioC] Integrating Codelink data with bioconductor (using affy and limmafunctions)   Gordon Smyth
• [BioC] Integrating Codelink data with bioconductor (using affyand limmafunctions)   Gordon Smyth
• [BioC] A question regarding the mean of M-values.   Gordon Smyth
• [BioC] backgroundCorrect(method="normexp") problems   Gordon Smyth
• [BioC] limma and files with separate channels   Gordon Smyth
• [BioC] Wilcoxon test [was loged data or not loged previous to use normalize.quantile]   Gordon K Smyth
• [BioC] LimmaGUI discards spots with no signal on one channel?   Gordon K Smyth
• [BioC] technical replicates and spots in limma   Gordon K Smyth
• [BioC] LimmaGUI discards spots with no signal on one channel?   Gordon K Smyth
• [BioC] LIMMA:design (1, 2, 3, 3 ) , I got EXCITING results what could be the logic, since i have 2 replicates for 3rd group only?   Gordon K Smyth
• [BioC] LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?   Gordon K Smyth
• [BioC] SNPs tool ???   Mayte Suarez-Farinas
• [BioC] Reading STDEV in CEL files   Mayte Suarez-Farinas
• [BioC] xy2i in SNps...   Mayte Suarez-Farinas
• [BioC] makecdfenv error   Ambika Sundaresan
• [BioC] maQualityPlots   NATALIA F TCHETCHERINA
• [BioC] maQualityPlots   NATALIA F TCHETCHERINA
• [BioC] Bioconductor and R_LIBS   Steve Taylor
• [BioC] qc.affy problem   Steve Taylor
• [BioC] Clustering non-biological replicate chips   Ken Termiso
• [BioC] Siggenes SAM analysis with unequal # of control and exp chips   Ken Termiso
• [BioC] solicitation for Affy bovine cdf environment   Anjanette Watson
• [BioC] MA plot (using fitted M values)   Choon Wei Wee
• [BioC] tkrplot-error-help   James Wettenhall
• [BioC] Arabidopsis annotation package   Dion Whitehead
• [BioC] FYI from apple employee RE: [R] Memory error in Mac OS X   David Williamson
• [BioC] Detection call for Hu6800   Claire Wilson
• [BioC] Limma: genes with B<0   Wu, Xiwei
• [BioC] gcrma problem   Zhijin Wu
• [BioC] Tiling array application   Zhijin Wu
• [BioC] Tiling array application   Zhijin Wu
• [BioC] GCRMA computing affinities error length(prlen) == 1   Zhijin Wu
• [BioC] how to keep R as the latest version in the simple way?   Yanqin Yang
• [BioC] Reading micrroaray data   Malik Yousef
• [BioC] How to start?   Malik Yousef
• [BioC] where to start?   Malik Yousef
• [BioC] where to start?   Malik Yousef
• [BioC] annaffy annotation problem (hgu133plus2)   John Zhang
• [BioC] missing AnnBuilder parser   John Zhang
• [BioC] missing AnnBuilder parser   John Zhang
• [BioC] limma and files with separate channels   Guoneng Zhong
• [BioC] limma and files with separate channels   Guoneng Zhong
• [BioC] decideTests and topTable   Humberto Ortiz Zuazaga
• [BioC] Binary CDF file   andrew.w.wooster at gsk.com
• [BioC] Binary CDF file   andrew.w.wooster at gsk.com
• [BioC] GCRMA computing affinities error length(prlen) == 1   andrew.w.wooster at gsk.com
• [BioC] justGCRMA and binary .CDF file   andrew.w.wooster at gsk.com
• [BioC] FW: reading imagene data into limma   ben
• [BioC] Rgraphviz error   bernard-michel caroline
• [BioC] annaffy annotation problem (hgu133plus2)   aedin culhane
• Fw: [BioC] retrieve raw data from soft file   guillaume deplaine
• [BioC] Gene selection: association with linear response and correction for multi test   david neil hayes
• [BioC] Linear response gene selection techniques   david neil hayes
• [BioC] FYI from apple employee RE: [R] Memory error in Mac OS X   stefano iacus
• [BioC] question about multtest v.1.5.2   ivan.borozan at utoronto.ca
• [BioC] median values   kfbargad at lg.ehu.es
• [BioC] U133plus2.0 memory problem   kfbargad at lg.ehu.es
• [BioC] ath11 annotation files   lettieri at igb.cnr.it
• [BioC] sam analysis question   lettieri at igb.cnr.it
• [BioC] A question regarding the mean of M-values.   marcus
• [BioC] tkrplot-error-help   vijayaraj nagarajan
• [BioC] error-"couldnt find tkrplot"-kindly-help   vijayaraj nagarajan
• [BioC] is-normalisation-really-required   vijayaraj nagarajan
• [BioC] is-normalisation-really-required   vijayaraj nagarajan
• [BioC] arrayQuality: Error: recursive default argument reference   vijayaraj nagarajan
• [BioC] experiment-design-advice-request   vijayaraj nagarajan
• [BioC] reposTool package: permission problems on liblisting.Rda file   rue
• [BioC] annaffy annotation problem (hgu133plus2)   sdurinck at ebi.ac.uk
• [BioC] RE: Bioconductor Digest, Vol 26, Issue 5   Jiuzhou song
• [BioC] (no subject)   Jiuzhou song
• [BioC] exprSet   Jiuzhou song
• [BioC] Pearson correlation and p-values for a matrix   xpeng
• [BioC] Cho et al.'s Expression Dataset in Yeast   xpeng
• [BioC] Question about Correlation (Limma package)   yzou1971 at netscape.net

Last message date: Sat Apr 30 20:49:04 CEST 2005
Archived on: Sun May 1 17:37:47 CEST 2005

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