[BioC] affy SNP chips

[James MacDonald]

I am seriously considering a package for the Affy SNP chips (A/B calls,
LOH, copy number). However, a current stumbling block is the lack of a
text Xba .cdf file. They have converted both .cdfs to binary format, and
we don't currently have the tools to read them (luckily, I already made
a cdfenv for the Hind chip). If anybody has a text version of the Xba
.cdf I would appreciate getting a copy.

Best,

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
>>> Dick Beyer <dbeyer at u.washington.edu> 04/01/05 2:50 PM >>>
Are the any plans for anyone to offer a package for the analysis of Affy
SNP chips? (10K, 100K, or 500K).

Thanks,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D.	University of Washington
Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
Fax: (206) 685 4696	4225 Roosevelt Way NE, # 100
 			Seattle, WA 98105-6099
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html

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