[BioC] SpikeIn and rma, MAS5 and dChip

Mohammad Esad-Djou shahrgol at web.de
Thu Apr 21 19:38:37 CEST 2005


Hello, 

I would like to make simple test with SpikeIn: (like Dilution)

library(affy)
library(affydata)
data(SpikeIn)

myprobesets <- geneNames(SpikeIn)[1:12]

eset <- rma(SpikeIn,subset=myprobesets)

but I get error message:
>myprobesets <- geneNames(SpikeIn)[1:12]
Error in geneNames(SpikeIn) : No direct or inherited method for function "geneNames" for this call

which difference between Dilution and SpikeIn gives? How can I use MAS5, RMA and dChip for SpikeIn?

Thanks,
Mohammad Esad-Djou



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