[BioC] Bioconductor and R_LIBS
Steve Taylor
stephen.taylor at molecular-sciences.ox.ac.uk
Wed Apr 6 11:22:17 CEST 2005
Hi Seth,
> Can you post the output of sessionInfo() after reproducing the session
> as above?
>
>
>>In this case, this doesn't stop the user using the affy package (in
>>fact this seems to be an issue with reposTools) but the warnings are
>>a little disconcerting.
>
>
> Yes, this is not desired/intended behavior and we'll see what we can
> do to resolve it.
>
Here's the full session including sessionInfo :
> library(affy)
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view,
simply type: openVignette()
For details on reading vignettes, see
the openVignette help page.
Loading required package: reposTools
Warning message:
Incorrect permissions to edit package database,
/package/R/2.0.1/lib/R/library/liblisting.Rda in:
save.locLib(locLibList, curLib)
> sessionInfo()
R version 2.0.1, 2004-11-15, sparc-sun-solaris2.9
attached base packages:
[1] "tools" "methods" "stats" "graphics" "grDevices" "utils"
[7] "datasets" "base"
other attached packages:
affy reposTools Biobase
"1.5.8" "1.5.2" "1.5.0"
>
Thanks,
Steve
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