October 2011 Archives by date
Starting: Sat Oct 1 00:11:00 CEST 2011
Ending: Mon Oct 31 22:15:26 CET 2011
Messages: 467
- [BioC] [BioMart Users] biomaRt returning multiple columns out of order
Richard Hayes
- [BioC] edgeR on microRNA data
Gordon K Smyth
- [BioC] Help strange GSEA error
musa
- [BioC] edgeR on microRNA data
Gordon K Smyth
- [BioC] Rsamtools question
Alpesh Querer
- [BioC] edge R data reading
kuntal worah
- [BioC] R/Bioconductor package to analyze illumina iscan genotyping data
John Clark
- [BioC] edgeR on microRNA data
Gordon K Smyth
- [BioC] GEOquery returns error "scan() expected 'an integer'"
Timothée Flutre
- [BioC] edgeR on microRNA data
Gordon K Smyth
- [BioC] edgeR on microRNA data
Helena Persson
- [BioC] edgeR on microRNA data
Gordon K Smyth
- [BioC] edgeR on microRNA data
Helena Persson
- [BioC] edgeR on microRNA data
Gordon K Smyth
- [BioC] edgeR on microRNA data
Helena Persson
- [BioC] heatmap.2 function and the scale option
john herbert
- [BioC] Problem with tkWidgets
Ignacio López de Ullibarri [guest]
- [BioC] GEOquery returns error "scan() expected 'an integer'"
Sean Davis
- [BioC] silly looping question
Nathalie Conte
- [BioC] silly looping question
Benilton Carvalho
- [BioC] Problem with tkWidgets
James W. MacDonald
- [BioC] GEOquery returns error "scan() expected 'an integer'"
Timothée Flutre
- [BioC] GEOquery returns error "scan() expected 'an integer'"
Sean Davis
- [BioC] problem with frma( )
Wang,Ying
- [BioC] problem with frma( )
Matthew McCall
- [BioC] Chip-seq quality control
Lucia Peixoto
- [BioC] GEOquery, Limma Annotations
Ovokeraye Achinike-Oduaran
- [BioC] GEOquery, Limma Annotations
Ovokeraye Achinike-Oduaran
- [BioC] Problem with tkWidgets
Ignacio Lopez De Ullibarri Galparsoro
- [BioC] poe.mcmc - phenotypic label - coding
mjonczyk
- [BioC] cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
viritha k
- [BioC] present / absent calls and detection p-values
Andreas Heider
- [BioC] GEO and Limma
Ovokeraye Achinike-Oduaran
- [BioC] Chip-seq quality control
Ivan Gregoretti
- [BioC] present / absent calls and detection p-values
Kasper Daniel Hansen
- [BioC] GEO and Limma
Freudenberg, Johannes (NIH/NIEHS) [E]
- [BioC] Rsamtools question
Valerie Obenchain
- [BioC] Rsamtools question
Valerie Obenchain
- [BioC] GEO and Limma
Ovokeraye Achinike-Oduaran
- [BioC] GEO and Limma
Sean Davis
- [BioC] Chip-seq quality control
Martin Morgan
- [BioC] course announcement: Bioconductor basics, 24-25 oct 2011, Longwood Medical Area, Boston
Vincent Carey
- [BioC] rma of oligo feature set crashes R
Thomas H. Hampton
- [BioC] rma of oligo feature set crashes R
Benilton Carvalho
- [BioC] present / absent calls and detection p-values
Wei Shi
- [BioC] illuminaHumanv4 mappings
Mark Cowley
- [BioC] limma data frame subsetting problem
Jabez Wilson
- [BioC] limma data frame subsetting problem
axel.klenk at actelion.com
- [BioC] [flowCore] problems with read.flowSet
Stephan Fuhrmann
- [BioC] GEO and Limma
Ovokeraye Achinike-Oduaran
- [BioC] Chip-seq quality control
Lucia Peixoto
- [BioC] limma data frame subsetting problem
Jabez Wilson
- [BioC] [question] integration of microarray data from different sources in limma package
이선재
- [BioC] limma data frame subsetting problem
axel.klenk at actelion.com
- [BioC] heatmap.2 function and the scale option
Aleš Maver
- [BioC] Merge dataframes
João Daniel Nunes Duarte
- [BioC] how to deal with Fastq file more than 30G
wang peter
- [BioC] how to apply for a member in bioconductor maillist
wang peter
- [BioC] poe.mcmc - phenotypic label - coding
Debashis Ghosh
- [BioC] RankProd related question
Wendy Qiao
- [BioC] how to deal with a 30G fastq file
wang peter
- [BioC] how to deal with a 30G fastq file
Martin Morgan
- [BioC] limma suitability for correlated data
Max Mariasegaram
- [BioC] poe.mcmc - phenotypic label - coding
mjonczyk
- [BioC] makeContrasts function
konika chawla
- [BioC] RankProd related question
Sean Davis
- [BioC] Regression analysis problem
khadeeja ismail
- [BioC] Regression analysis problem
Sean Davis
- [BioC] mapping through org.Xx.eg.db packages
Iain Gallagher
- [BioC] mapping through org.Xx.eg.db packages
Sean Davis
- [BioC] [flowCore] problems with read.flowSet
Finak, Greg
- [BioC] mapping through org.Xx.eg.db packages
Martin Morgan
- [BioC] the same problem happened
wang peter
- [BioC] [question] integration of microarray data from different sources in limma package
Andreas Heider
- [BioC] how to deal with a 30G fastq file
Steve Lianoglou
- [BioC] the same problem happened
Sean Davis
- [BioC] Regression analysis problem
khadeeja ismail
- [BioC] how to update a bioconductor package
wang peter
- [BioC] how to update a bioconductor package
Kasper Daniel Hansen
- [BioC] how to update a bioconductor package
Sean Davis
- [BioC] the same problem happened
Sean Davis
- [BioC] how to update a bioconductor package
Sean Davis
- [BioC] [flowCore] problems with read.flowSet
Jiang, Mike
- [BioC] 'parallel' vs 'multicore'
Tim Triche, Jr.
- [BioC] 'parallel' vs 'multicore'
Martin Morgan
- [BioC] 'parallel' vs 'multicore'
Tim Triche, Jr.
- [BioC] how to deal with a 30G fastq file
Martin Morgan
- [BioC] 'parallel' vs 'multicore'
Martin Morgan
- [BioC] Conference announcement: Omics and Personalised Health, EMBL Heidelberg, 16-18 February 2012
Wolfgang Huber
- [BioC] Analysis of Affymetrix Cytogenetic Whole-Genome 2.7M array
Lavinia Gordon
- [BioC] Problems with edgeR for differential expression.
Nick Schurch
- [BioC] Bioconductor Digest, Vol 104, Issue 7
Stefan McKinnon Høj-Edwards
- [BioC] Regression analysis problem
khadeeja ismail
- [BioC] Agi4x44PreProcess package: Error in build.est
Jon Mohl
- [BioC] Creating One Single Object with Phenotype and Expression Data
Ben Ganzfried
- [BioC] Regression analysis problem
James W. MacDonald
- [BioC] Regression analysis problem
Tim Triche, Jr.
- [BioC] Fwd: Creating One Single Object with Phenotype and Expression Data
Ben Ganzfried
- [BioC] GetEnrichedGo term
Zhu, Lihua (Julie)
- [BioC] Agi4x44PreProcess package: Error in build.est
Francois Pepin
- [BioC] [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Hervé Pagès
- [BioC] about refseq_dna in biomat
Ou, Jianhong
- [BioC] Regression analysis problem
Kevin R. Coombes
- [BioC] Regression analysis problem
Andrew Teschendorff
- [BioC] how to update a bioconductor package
Hervé Pagès
- [BioC] (BSgenome) forgeBSgenomeDataPkg for Sus scrofa problem
Elisabetta Manduchi
- [BioC] Agi4x44PreProcess package: Error in build.est
Jarek Bryk
- [BioC] how to update a bioconductor package
Hervé Pagès
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Paniagua, Eric
- [BioC] Pie chart
Roopa Subbaiah [guest]
- [BioC] Regression analysis problem
khadeeja ismail
- [BioC] [Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Michael Lawrence
- [BioC] Coverage by base
rohan bareja
- [BioC] Problems with edgeR for differential expression
Gordon K Smyth
- [BioC] Coverage by base
Michael Lawrence
- [BioC] Merge dataframes
Aleš Maver
- [BioC] about refseq_dna in biomat
Hans-Rudolf Hotz
- [BioC] about refseq_dna in biomat
Ou, Jianhong
- [BioC] Fwd: Creating One Single Object with Phenotype and Expression Data
Wolfgang Huber
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Wolfgang Huber
- [BioC] Merge dataframes
"João Daniel N. Duarte"
- [BioC] Merge dataframes
D. Schruth
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Paniagua, Eric
- [BioC] Agi4x44PreProcess package: Error in build.est
Jon Mohl
- [BioC] Mapping deletions onto chromosome ideograms
Srinivas Srikanth
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Wolfgang Huber
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Paniagua, Eric
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Duncan Temple Lang
- [BioC] arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
Wolfgang Huber
- [BioC] heatmap.2 function and the scale option
john herbert
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Tim Triche, Jr.
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Sean Davis
- [BioC] how to deal with Fastq file more than 30G
Steve Lianoglou
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Tim Triche, Jr.
- [BioC] a question about getCdfInfo package in GCRMA, thanks for your help.
liuyang zhao
- [BioC] Regression analysis problem
khadeeja ismail
- [BioC] Coverage by base
rohan bareja
- [BioC] Coverage by base
Steve Lianoglou
- [BioC] Coverage by base
rohan bareja
- [BioC] Coverage by base
Steve Lianoglou
- [BioC] Coverage by base
rohan bareja
- [BioC] Coverage by base
rohan bareja
- [BioC] heat map for a time course study
blockaa at huskers.unl.edu
- [BioC] Agi4x44PreProcess package: Error in build.est
Francois Pepin
- [BioC] EdgeR: Log FC does not changes when I swap the groups
saad khan [guest]
- [BioC] (BSgenome) forgeBSgenomeDataPkg for Sus scrofa problem
Hervé Pagès
- [BioC] (BSgenome) forgeBSgenomeDataPkg for Sus scrofa problem
Elisabetta Manduchi
- [BioC] heat map for a time course study
Thomas H. Hampton
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Wei Shi
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Tim Triche, Jr.
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Wei Shi
- [BioC] Bioinformatics course - October 2011 Registration is now open
Claude Chelala
- [BioC] Problems with edgeR for differential expression
Nick Schurch
- [BioC] Fwd: Problems with edgeR for differential expression
Nick Schurch
- [BioC] still the trimLRPatterns problem
wang peter
- [BioC] read.maimage error message
Kathy [guest]
- [BioC] report a problem
wang peter
- [BioC] Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
Tim Triche, Jr.
- [BioC] Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
Martin Morgan
- [BioC] still the trimLRPatterns problem
Harris A. Jaffee
- [BioC] Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
Tim Triche, Jr.
- [BioC] Coverage by base
rohan bareja
- [BioC] report a problem (trimLRPatterns not symmetric?)
Harris A. Jaffee
- [BioC] Regarding subread vignette
Wei Shi
- [BioC] read.maimage error message
mjonczyk
- [BioC] postForm in RCurl
Ovokeraye Achinike-Oduaran
- [BioC] edgeR design matrix
lpascual
- [BioC] ChIPpeakAnno - for genes with multiple isoforms
Zhu, Lihua (Julie)
- [BioC] Installing packages on R v2.13.2, OSX multiple warning messages
Sarah Little [guest]
- [BioC] Coverage by base
Hervé Pagès
- [BioC] Installing packages on R v2.13.2, OSX multiple warning messages
Kasper Daniel Hansen
- [BioC] Installing packages on R v2.13.2, OSX multiple warning messages
James W. MacDonald
- [BioC] Coverage by base
Steve Lianoglou
- [BioC] Coverage by base
Michael Lawrence
- [BioC] postForm in RCurl
Duncan Temple Lang
- [BioC] Coverage by base
Hervé Pagès
- [BioC] [Job] Functional genomic analysis of cancer/RNAi screening
Sean Davis
- [BioC] edgeR on microRNA data
Hervé Pagès
- [BioC] need help with SNP6.0 quantile normalization
qian liu
- [BioC] need help with SNP6.0 quantile normalization
Vincent Carey
- [BioC] a question about getCdfInfo package in GCRMA, thanks for your help.
mjonczyk
- [BioC] rma of oligo feature set crashes R
Hervé Pagès
- [BioC] need help with SNP6.0 quantile normalization
Benilton Carvalho
- [BioC] Coverage by base
rohan bareja
- [BioC] a question about getCdfInfo package in GCRMA, thanks for your help.
James W. MacDonald
- [BioC] Why are there different number of pathways in pathway2gene and in pathway2name (KEGG.db)?
Peng Yu
- [BioC] need help with SNP6.0 quantile normalization_How to extract reference distribution
qian liu
- [BioC] need help with SNP6.0 quantile normalization_How to extract reference distribution
Benilton Carvalho
- [BioC] Coverage by base
Hervé Pagès
- [BioC] edgeR on microRNA data
Dan Tenenbaum
- [BioC] EdgeR: Log FC does not changes when I swap the groups
Gordon K Smyth
- [BioC] edgeR on microRNA data
Helena Persson
- [BioC] BSgenome package for sacCer3
Hervé Pagès
- [BioC] Problems with edgeR for differential expression
Gordon K Smyth
- [BioC] Regarding subread vignette
Wei Shi
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Wei Shi
- [BioC] Is it possible to generate an ExpressionSet object that contain duplicate row names?
nqueralt at clinic.ub.es
- [BioC] best annotation package for drosophila (agilent gene expression)?
Jarek Bryk
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Tim Triche, Jr.
- [BioC] Is it possible to generate an ExpressionSet object that contain duplicate row names?
Tim Triche, Jr.
- [BioC] postForm in RCurl
Ovokeraye Achinike-Oduaran
- [BioC] postForm in RCurl
Ovokeraye Achinike-Oduaran
- [BioC] Is it possible to generate an ExpressionSet object that contain duplicate row names?
Martin Morgan
- [BioC] Limma model parameters design, combining a paired with a factorial design
john herbert
- [BioC] Limma model parameters design, combining a paired with a factorial design
James W. MacDonald
- [BioC] Problem with a specific GEO dataset.
Shawn Garbett [guest]
- [BioC] Problem with a specific GEO dataset.
Sean Davis
- [BioC] Rsubread vs. BWA, Bowtie, etc. and RPKM vs. normalized counts
Wei Shi
- [BioC] edgeR design matrix
Gordon K Smyth
- [BioC] Postdoctoral Position in Statistical Genomics - Zurich
Mark Robinson
- [BioC] RNA-Seq : comparison cuffdiff, edgeR, Partek
Lana Schaffer
- [BioC] RNA-Seq : comparison cuffdiff, edgeR, Partek
vasu punj
- [BioC] Limma and Names Assignment
Ovokeraye Achinike-Oduaran
- [BioC] Problems with edgeR for differential expression
Nick Schurch
- [BioC] Limma and Names Assignment
Sean Davis
- [BioC] Limma and Names Assignment
Ovokeraye Achinike-Oduaran
- [BioC] question about affymetrix array:ht-hg-u133acdf
Richard [guest]
- [BioC] Sample Grouping
rajasereddy
- [BioC] question about affymetrix array:ht-hg-u133acdf
James W. MacDonald
- [BioC] R/Bioconductor CDF to Affymetrix CDF
Benjamin Otto
- [BioC] R/Bioconductor CDF to Affymetrix CDF
Benjamin Otto
- [BioC] edgeR design matrix
lpascual
- [BioC] R/Bioconductor CDF to Affymetrix CDF
James W. MacDonald
- [BioC] R/Bioconductor CDF to Affymetrix CDF
Samuel Wuest
- [BioC] R/Bioconductor CDF to Affymetrix CDF
Hooiveld, Guido
- [BioC] edgeR design matrix
Mark Robinson
- [BioC] Coverage by base
rohan bareja
- [BioC] Coverage by base
rohan bareja
- [BioC] two way ANOVA with limma
Grant R Cramer
- [BioC] Problems with edgeR for differential expression
Gordon K Smyth
- [BioC] edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Emanuel Heitlinger
- [BioC] two way ANOVA with limma
Gordon K Smyth
- [BioC] (no subject)
Jiuzhou song
- [BioC] edgeR design matrix
lpascual
- [BioC] Limma model parameters design, combining a paired with a factorial design
john herbert
- [BioC] CDF for GeneChip miRNA 2 array
ATTIA [guest]
- [BioC] error in reading cel file for snp6.0 using aroma.affymetrix
qian liu
- [BioC] CDF for GeneChip miRNA 2 array
Hooiveld, Guido
- [BioC] PostForm and readHTML Table
Ovokeraye Achinike-Oduaran
- [BioC] Coverage of reads in 3'UTR
rohan bareja
- [BioC] Boston Bioconductor Basics registration will close tomorrow.
Vincent Carey
- [BioC] edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Gordon K Smyth
- [BioC] edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Gordon K Smyth
- [BioC] Illumina array analysis
Chintanu
- [BioC] Illumina array analysis
Wei Shi
- [BioC] Statistical programmer position at FHCRC
Finak, Greg
- [BioC] Coverage of reads in 3'UTR
Michael Lawrence
- [BioC] perWindow chr coordinates (girafe)
Karl Erhard
- [BioC] GEOquery and Limma
Ovokeraye Achinike-Oduaran
- [BioC] perWindow chr coordinates (girafe)
Joern Toedling
- [BioC] GEOquery and Limma
Sean Davis
- [BioC] Illumina array analysis
Belmont, John W
- [BioC] Using DESeq with ChIP-seq data - all or non-redundant reads?
Ian Donaldson
- [BioC] ArrayExpressHTS fails to load
Sean Rogers
- [BioC] how to define a forward or reverse read file
wang peter
- [BioC] Importing .cdt files generated by Cluster3.0 into R
Sohail [guest]
- [BioC] Postdoctoral position in biostatistics/bioinformatics/computational biology
Medvedovic, Mario (medvedm)
- [BioC] heatmap.2 Z-score vs logFC
Neel Aluru
- [BioC] heatmap.2 Z-score vs logFC
Ochsner, Scott A
- [BioC] heatmap.2 Z-score vs logFC
Sean Davis
- [BioC] DNase Seq Analysis using R
Samarjeet
- [BioC] heatmap.2 Z-score vs logFC
Neel Aluru
- [BioC] DNase Seq Analysis using R
Sean Davis
- [BioC] DNase Seq Analysis using R
vasu punj
- [BioC] edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Emanuel Heitlinger
- [BioC] annotation package for Schizosacharomyces pombe
Clémentine Dressaire
- [BioC] Importing .cdt files generated by Cluster3.0 into R
Valerie Obenchain
- [BioC] Importing .cdt files generated by Cluster3.0 into R
Kevin R. Coombes
- [BioC] Illumina array analysis
Wei Shi
- [BioC] Illumina array analysis
Chintanu
- [BioC] Regression analysis using expression microarray to determine phenotypic correlation
Ruppert Valentino
- [BioC] Illumina array analysis
Wei Shi
- [BioC] edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Gordon K Smyth
- [BioC] edgeR questions
Asma rabe
- [BioC] edgeR - coefficients in 3-factor experiment, complex contrasts and decideTestsDGE
Emanuel Heitlinger
- [BioC] annotation db for miRNA_2 Array
attia fatima
- [BioC] annotation dbi for miRNA 2.0 Array
Attia [guest]
- [BioC] annotation db for miRNA_2 Array
Jan Van der Goten
- [BioC] feature filter for GENE Chip miRNA 2.0 array
ATTIA [guest]
- [BioC] [BioMart Users] biomaRt returning multiple columns out of order
Laurent Gatto
- [BioC] [BioMart Users] biomaRt returning multiple columns out of order
Steffen Durinck
- [BioC] Problem with limma for two-color factorial design - Coefficients not estimable
Stephen Turner
- [BioC] SNP 6 chip
John linux-user
- [BioC] [BioMart Users] biomaRt returning multiple columns out of order
vasu punj
- [BioC] \'mirna20probe
ATTIA [guest]
- [BioC] \'mirna20probe
James W. MacDonald
- [BioC] SNP 6 chip
James W. MacDonald
- [BioC] SNP 6 chip
cstrato
- [BioC] SNP 6 chip
Benilton Carvalho
- [BioC] SNP 6 chip
Samarjeet
- [BioC] Erros in crlmm Re: SNP 6 chip
John linux-user
- [BioC] What is the difference of layout between genepix scanner & agilent scanner
이선재
- [BioC] ArrayExpressHTS fails to load
Dan Tenenbaum
- [BioC] Fwd: edgeR questions
Asma rabe
- [BioC] Manual creation of Affybatch object to study highthrouput qPCR experiments.
Ali Mo [guest]
- [BioC] Erros in crlmm Re: SNP 6 chip
Benilton Carvalho
- [BioC] removeBatchEffect problem
John Coulthard
- [BioC] Erros in crlmm Re: SNP 6 chip
John linux-user
- [BioC] Erros in crlmm Re: SNP 6 chip
Benilton Carvalho
- [BioC] Ensembl websites offline for maintenance
Rhoda Kinsella
- [BioC] Manual creation of Affybatch object to study highthrouput qPCR experiments.
James W. MacDonald
- [BioC] removeBatchEffect problem
James W. MacDonald
- [BioC] Using DESeq with ChIP-seq data - all or non-redundant reads?
Ivan Gregoretti
- [BioC] Manual creation of Affybatch object to study highthrouput qPCR experiments.
James Perkins
- [BioC] how to check paired end data
wang peter
- [BioC] Using DESeq with ChIP-seq data - all or non-redundant reads?
Rory Stark
- [BioC] Ensembl websites offline for maintenance
Robert Castelo
- [BioC] Ensembl websites offline for maintenance
Rhoda Kinsella
- [BioC] Coverage of reads in 3'UTR
rohan bareja
- [BioC] Manual creation of Affybatch object to study highthrouput qPCR experiments.
Heidi Dvinge
- [BioC] removeBatchEffect problem
John Coulthard
- [BioC] Using DESeq with ChIP-seq data - all or non-redundant reads?
Ian Donaldson
- [BioC] Ensembl websites offline for maintenance
Rhoda Kinsella
- [BioC] removeBatchEffect problem
James W. MacDonald
- [BioC] Using DESeq with ChIP-seq data - all or non-redundant reads?
Ivan Gregoretti
- [BioC] edgeR: plotSmear for multiple detags
steve Shen
- [BioC] ArrayExpressHTS fails to load
Martin Morgan
- [BioC] error with MEDIPS.CpGenrich when using extend
Elisabetta Manduchi
- [BioC] Illumina array analysis
Chintanu
- [BioC] Illumina array analysis
Wei Shi
- [BioC] Illumina array analysis
Wei Shi
- [BioC] Illumina array analysis
vasu punj
- [BioC] miRNA 2.0 Array, Annotation Files how to use it after rma and readaffy
Attia [guest]
- [BioC] removeBatchEffect problem
John Coulthard
- [BioC] miRNA 2.0 Array, Annotation Files how to use it after rma and readaffy
Sean Davis
- [BioC] GRanges findOverlaps error
Kathi Zarnack
- [BioC] annotation file and expression set genechip miRNA 2 array
Attia [guest]
- [BioC] annotation file and expression set genechip miRNA 2 array
Sean Davis
- [BioC] GRanges findOverlaps error
Michael Lawrence
- [BioC] Computational Biologist position available in Screening Unit in Milan, Italy
mattia pelizzola
- [BioC] error with MEDIPS.CpGenrich when using extend
Joern Dietrich
- [BioC] GRanges findOverlaps error
Vincent Carey
- [BioC] PICS
Zhu, Lihua (Julie)
- [BioC] PICS
Arnaud Droit
- [BioC] liftOver() issues
Tim Triche, Jr.
- [BioC] PICS
Zhu, Lihua (Julie)
- [BioC] PICS
Arnaud BioC
- [BioC] PICS
Zhu, Lihua (Julie)
- [BioC] Binomial regression of HTqPCR data
Christopher Howerton
- [BioC] edgeR: plotSmear for multiple detags
Mark Robinson
- [BioC] extending XString to facilitate miRNA editing
Jeremy Leipzig
- [BioC] edgeR: plotSmear for multiple detags
steve Shen
- [BioC] PICS : makeRangedDataOutput
Zhu, Lihua (Julie)
- [BioC] uneven counts for edgeR
Lana Schaffer
- [BioC] PCR bias in RNA-Seq
Lana Schaffer
- [BioC] biomaRt query problems- plants_mart_10
Samuel Wuest
- [BioC] biocLite breaks when `svn rev` is "unknown"
Michael Lawrence
- [BioC] biocLite breaks when `svn rev` is "unknown"
Martin Morgan
- [BioC] CLLbatch does not work
william [guest]
- [BioC] CLLbatch does not work
Martin Morgan
- [BioC] uneven counts for edgeR
Gordon K Smyth
- [BioC] ShortRead::report() breaks in mac osx
Robert Castelo
- [BioC] ShortRead::report() breaks in mac osx
Vincent Carey
- [BioC] ShortRead::report() breaks in mac osx
Robert Castelo
- [BioC] extending XString to facilitate miRNA editing
Michael Lawrence
- [BioC] biocLite breaks when `svn rev` is "unknown"
Michael Lawrence
- [BioC] biocLite breaks when `svn rev` is "unknown"
Martin Morgan
- [BioC] uneven counts for edgeR
Lana Schaffer
- [BioC] uneven counts for edgeR
Simon Anders
- [BioC] how to extract promoter regions and detect motif occurrence counts?
Edward Turner
- [BioC] how to extract promoter regions and detect motif occurrence counts?
Steve Lianoglou
- [BioC] how to extract promoter regions and detect motif occurrence counts?
Yuan Hao
- [BioC] biomaRt query problems- plants_mart_10
Wolfgang Huber
- [BioC] biomaRt query problems- plants_mart_10
Dan Tenenbaum
- [BioC] how to extract promoter regions and detect motif occurrence counts?
Ivan Gregoretti
- [BioC] edgeR: plotSmear for multiple detags
steve Shen
- [BioC] biomaRt query problems- plants_mart_10
Samuel Wuest
- [BioC] control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Jeroen BOGIE
- [BioC] Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
Jason Lu
- [BioC] Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
James W. MacDonald
- [BioC] Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
Jason Lu
- [BioC] Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
James W. MacDonald
- [BioC] Connecting to Uniprot Biomart using biomaRt
kenny daily
- [BioC] Connecting to Uniprot Biomart using biomaRt
Dan Tenenbaum
- [BioC] any package to do gene expression value estimation
wang peter
- [BioC] biomaRt query ??
Tim Smith
- [BioC] F values from topTable with coef=NULL testing all zero or all equal?
Michael Muratet
- [BioC] topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
Joseph Skaf
- [BioC] Normalization in Coverage
rohan bareja
- [BioC] Illumina array analysis
Chintanu
- [BioC] Comparing two gff/gtf files : de novo transcripts v/s reference
Abhishek Pratap
- [BioC] Illumina array analysis
Tim Triche, Jr.
- [BioC] any package to do gene expression value estimation
Martin Morgan
- [BioC] Illumina array analysis
vasu punj
- [BioC] Connecting to Uniprot Biomart using biomaRt
Rhoda Kinsella
- [BioC] Connecting to Uniprot Biomart using biomaRt
Rhoda Kinsella
- [BioC] Computational biologist positions at the PICR
Crispin Miller
- [BioC] comparing two tables
Assa Yeroslaviz
- [BioC] breastCancerNKI patients question
Xavier Robin
- [BioC] breastCancerNKI patients question
Sean Davis
- [BioC] breastCancerNKI patients question
Markus Schroeder
- [BioC] F values from topTable with coef=NULL testing all zero or all equal?
James W. MacDonald
- [BioC] comparing two tables
Martin Morgan
- [BioC] any package to do gene expression value estimation
wang peter
- [BioC] visualise model fit in edgeR
Iain Gallagher
- [BioC] any package to do gene expression value estimation
Martin Morgan
- [BioC] Fwd: Connecting to Uniprot Biomart using biomaRt
Dan Tenenbaum
- [BioC] Fwd: F values from topTable with coef=NULL testing all zero or all equal?
Michael Muratet
- [BioC] comparing two tables
Assa Yeroslaviz
- [BioC] any package to do gene expression value estimation
wang peter
- [BioC] any package to do gene expression value estimation
Martin Morgan
- [BioC] any package to do gene expression value estimation
Jason Lu
- [BioC] Single channel microarray
Niraj Nepal
- [BioC] breastCancerNKI patients question
Xavier Robin
- [BioC] F values from topTable with coef=NULL testing all zero or all equal?
Michael Muratet
- [BioC] [R] comparing two tables
David Winsemius
- [BioC] any package to do gene expression value estimation
wang peter
- [BioC] any package to do gene expression value estimation
Sean Davis
- [BioC] breastCancerNKI patients question
Benjamin Haibe-Kains
- [BioC] RNA-Seq: lognormal, Neg Bin, Poisson distribution
Lana Schaffer
- [BioC] any package to do gene expression value estimation
Wei Shi
- [BioC] any package to do gene expression value estimation
Wei Shi
- [BioC] reducing hits from countGenomicOverlaps()
Robert Castelo
- [BioC] breastCancerNKI patients question
Xavier Robin
- [BioC] biomaRt query ??
Rhoda Kinsella
- [BioC] "internal equal" overlap mode for GRangesList
Michael Lawrence
- [BioC] "internal equal" overlap mode for GRangesList
Sean Davis
- [BioC] Reading paired-end data into GRangesList
Hubert Rehrauer
- [BioC] "internal equal" overlap mode for GRangesList
Cook, Malcolm
- [BioC] Reading paired-end data into GRangesList
Cory Barr
- [BioC] uneven counts for edgeR
Lana Schaffer
- [BioC] NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Richard Friedman
- [BioC] reducing hits from countGenomicOverlaps()
Martin Morgan
- [BioC] reducing hits from countGenomicOverlaps()
Robert Castelo
- [BioC] uneven counts for edgeR
Gordon K Smyth
- [BioC] Reading paired-end data into GRangesList
Paul Leo
- [BioC] PostForm and readHTML Table
Martin Morgan
- [BioC] Error with read.SMD() of marray
Ignacio Lopez de Ullibarri [guest]
- [BioC] Practical utilization of SQN in ST1.0 Gene normalization.
Richard Friedman
- [BioC] Help with comparisons of lists of fold changes
David martin
- [BioC] Practical utilization of SQN in ST1.0 Gene normalization.
Tim Triche, Jr.
- [BioC] Identifying the genome sequence of an affy probe
Schragi Schwartz
- [BioC] Practical utilization of SQN in ST1.0 Gene normalization.
Richard Friedman
- [BioC] Identifying the genome sequence of an affy probe
Steve Lianoglou
- [BioC] Identifying the genome sequence of an affy probe
Kasper Daniel Hansen
- [BioC] Identifying the genome sequence of an affy probe
James W. MacDonald
- [BioC] Practical utilization of SQN in ST1.0 Gene normalization.
Tim Triche, Jr.
- [BioC] Identifying the genome sequence of an affy probe
Schragi Schwartz
- [BioC] reducing hits from countGenomicOverlaps()
Valerie Obenchain
- [BioC] Faculty position at Penn State (Bioinformatics and/or Statistics)
Naomi Altman
- [BioC] reducing hits from countGenomicOverlaps()
Robert Castelo
- [BioC] reducing hits from countGenomicOverlaps()
Valerie Obenchain
- [BioC] visualise model fit in edgeR
Gordon K Smyth
- [BioC] Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Kurinji Pandiyan
- [BioC] Reading paired-end data into GRangesList
Hubert Rehrauer
- [BioC] Reading paired-end data into GRangesList
Cory Barr
- [BioC] Reading paired-end data into GRangesList
Martin Morgan
- [BioC] Reading paired-end data into GRangesList
Hubert Rehrauer
- [BioC] Error loading library
diyanah [guest]
- [BioC] Error loading library
Dan Tenenbaum
- [BioC] Error loading library
Dan Tenenbaum
- [BioC] Error loading library
Nurdiyanah Jambari
- [BioC] Error loading library
Wolfgang Huber
- [BioC] find unregulated genes from ranks
Wendy Qiao
- [BioC] limma printer layout
mjonczyk
- [BioC] goSeq error
steve Shen
- [BioC] goSeq error
Steve Lianoglou
- [BioC] limma printer layout
Gordon K Smyth
- [BioC] goSeq error
steve Shen
- [BioC] visualise model fit in edgeR
Iain Gallagher
- [BioC] SGOL plot
viritha k
- [BioC] Agi4x44Preprocess/Limma and number of significant p-values
Paulo Nuin
- [BioC] Overlap of 3 gene lists and the Mantel-Haenszel test
Edwin Groot
- [BioC] unable to install lumi package
Juliet Hannah
- [BioC] unable to install lumi package
Dan Tenenbaum
- [BioC] unable to install lumi package
James W. MacDonald
- [BioC] Agi4x44Preprocess/Limma and number of significant p-values
Jarek Bryk
Last message date:
Mon Oct 31 22:15:26 CET 2011
Archived on: Tue Nov 1 00:39:14 CET 2011
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