[BioC] Illumina array analysis

[Wei Shi]

Hi Chintanu,

There is a case study for analyzing Illumina BeadChip data in limma user's guide. Type the following command in your R to bring up limma user's guide and then have a look at section 11.7.

limmaUsersGuide()


Cheers,
Wei

On Oct 18, 2011, at 12:55 PM, Chintanu wrote:

> Hi,
> 
> I'm new to my exploration with analysing illumina microarray data using r.
> While looking for some example case study (so that I can do my analysis
> taking pointers from that/those examples), I am unable to find anything
> useful. I would appreciate if you could either provide me with some pointers
> in that direction or share your codes that you have done while doing your
> illumina analysis.
> 
> I am mainly interested in the following: (i) read in the illumina files &
> check the quality of the files, (iii) normalization (any type), (iii)
> applying Limma and pick the differentially expressed genes.
> 
> Thank you.
> 
> regards,
> Chintanu
> 
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> 
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