[BioC] Importing .cdt files generated by Cluster3.0 into R
Valerie Obenchain
vobencha at fhcrc.org
Tue Oct 18 21:26:15 CEST 2011
Hello,
For importing these files into R see ?read.table and ?read.delim.
Reading the gtr should be fairly straightforward with read.table. The
cdt file might be better with read.delim and set fill=TRUE.
Valerie
On 10/18/2011 07:58 AM, Sohail [guest] wrote:
> Dear All,
>
> I have used the Cluster3.0 to generate cluster for gene expression data. I would like to import these files (.cdt,.gtr) into R. to generate silohuette plots.
> Basically, I would like to check for the robustness of the clusters. Could the files from Cluster3.0 be imported into R? I would appreciate any other suggestions.
> Thanks.
>
> -- output of sessionInfo():
>
> none
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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