[BioC] Agi4x44PreProcess package: Error in build.est

[Francois Pepin]

Hi Jon,

You would have to give us some more information about your code.

The error message indicates that you don't have the same number of samples data (tdPROC: colnames RGlist$G) as you have information about (targets: pData(targets)).

What sare the result of:
dim(tdPROC)
dim(targets)

Francois

On Oct 7, 2011, at 8:03 , Jon Mohl wrote:

> Hello,
> 
> I am currently getting a error when trying to use the build.est
> function of the Agi4x44PreProcess package.  The error is as follows:
> 
> Error in build.eset(tdPROC, targets, makePLOT = FALSE,
> annotation.package = "hgug4112a.db") :
>  rownames in pData(targets) different from colnames RGlist$G
> 
> Here is the command I have given:
> 
> esetPROC = build.eset(tdPROC, targets, makePLOT = FALSE,
> annotation.package="hgug4112a.db")
> 
> 
> I have followed the example within the Agi4x44PreProcess.pdf manual,
> and thus far this is the only problem I have run into.  For reference,
> I am running R 2.10.1.
> 
> Thanks for your help,
> 
> Jon Mohl
> 
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