[BioC] Agi4x44PreProcess package: Error in build.est

[Jarek Bryk]

>> Error in build.eset(tdPROC, targets, makePLOT = FALSE,
>> annotation.package = "hgug4112a.db") :
>>  rownames in pData(targets) different from colnames RGlist$G

>The error message indicates that you don't have the same number of samples data (tdPROC: colnames RGlist$G) as you have information about (targets: pData(targets)).

It can also happen when during the analysis you changed the name of
the samples (=colnames in RGlist) but did not change the names in your
targets file. They should stay be the same.

cheers
jarek

--
 Jarek Bryk | www.evolbio.mpg.de/~bryk
 Max Planck Institute for Evolutionary Biology
 August Thienemann Str. 2 | 24306 Plön, Germany
 tel. +49 4522 763 287 | bryk at evolbio.mpg.de