[BioC] unable to install lumi package

[Juliet Hannah]

I am unable to install the lumi package. I have printed the output and
errors below. Below that is my sessionInfo. Other bioconductor
packages I use installed without any problems. Thanks for any help.


> biocLite("lumi")

BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.1.34.
Installing package(s) 'lumi'
also installing the dependencies ârglâ, âksâ, âhdrcdeâ

trying URL 'http://cran.fhcrc.org/src/contrib/rgl_0.92.798.tar.gz'
Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
opened URL
==================================================
downloaded 1.6 Mb

trying URL 'http://cran.fhcrc.org/src/contrib/ks_1.8.3.tar.gz'
Content type 'application/x-gzip' length 283507 bytes (276 Kb)
opened URL
==================================================
downloaded 276 Kb

trying URL 'http://cran.fhcrc.org/src/contrib/hdrcde_2.15.tar.gz'
Content type 'application/x-gzip' length 45583 bytes (44 Kb)
opened URL
==================================================
downloaded 44 Kb

trying URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/lumi_2.5.7.tar.gz'
Content type 'application/x-gzip' length 11386085 bytes (10.9 Mb)
opened URL
==================================================
downloaded 10.9 Mb

* installing *source* package ârglâ ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for gcc... (cached) gcc -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -std=gnu99 accepts -g... (cached) yes
checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
checking for libpng-config... yes
configure: using libpng-config
configure: using libpng dynamic linkage
checking for X... libraries , headers
checking GL/gl.h usability... yes
checking GL/gl.h presence... yes
checking for GL/gl.h... yes
checking GL/glu.h usability... no
checking GL/glu.h presence... no
checking for GL/glu.h... no
configure: error: missing required header GL/glu.h
ERROR: configuration failed for package ârglâ
* removing â/home/R-2.14.0/library/rglâ
ERROR: dependency ârglâ is not available for package âksâ
* removing âl/home/R-2.14.0/library/ksâ
ERROR: dependency âksâ is not available for package âhdrcdeâ
* removing â/home/R-2.14.0/library/hdrcdeâ
ERROR: dependency âhdrcdeâ is not available for package âlumiâ
* removing â/home/R-2.14.0/library/lumiâ

The downloaded packages are in
        â/tmp/Rtmpeyt6CI/downloaded_packagesâ
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package ârglâ had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package âksâ had non-zero exit status
3: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package âhdrcdeâ had non-zero exit status
4: In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package âlumiâ had non-zero exit status


> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] affy_1.31.6          Biobase_2.13.12      BiocInstaller_1.1.34

loaded via a namespace (and not attached):
[1] affyio_1.21.2         preprocessCore_1.15.0 tools_2.14.0
[4] zlibbioc_0.99.0