[BioC] ArrayExpressHTS fails to load

Sean Rogers srogers at msu.edu
Tue Oct 18 16:45:23 CEST 2011


Hello,

I have recently installed the package ArrayExpressHTS. However it fails
to load into R. Could someone tell me if this is something I can fix or
is it perhaps a conflict related to Mac OS X Lion?

Thanks for your help/suggestions.
Regards

Sean A. Rogers Ph. D.

Research Associate, Department of Horticulture
Michigan State University
East Lansing, Michigan USA 48824

library("ArrayExpressHTS")
Loading required package: sampling
Loading required package: MASS
Loading required package: lpSolve
Loading required package: Rsamtools
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: snow
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object 
'/Library/Frameworks/R.framework/Versions/2.13/Resources/library/
ArrayExpressHTS/libs/x86_64/ArrayExpressHTS.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/
ArrayExpressHTS/libs/x86_64/ArrayExpressHTS.so, 6): Symbol not found: _bam_aux2i
  Referenced from: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/
ArrayExpressHTS/libs/x86_64/ArrayExpressHTS.so
  Expected in: dynamic lookup

Error: package/namespace load failed for 'ArrayExpressHTS'


sessionInfo()
R version 2.13.2 (2011-09-30)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] C/en_US.UTF-8/C/C/C/C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] snow_0.3-7          Rsamtools_1.4.3     Biostrings_2.20.4  
[4] GenomicRanges_1.4.8 IRanges_1.10.6      sampling_2.4       
[7] lpSolve_5.6.6       MASS_7.3-14        

loaded via a namespace (and not attached):
 [1] AnnotationDbi_1.14.1 Biobase_2.12.2       DBI_0.2-5           
 ...   
[25] svMisc_0.9-63        tools_2.13.2         xtable_1.6-0



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