[BioC] ArrayExpressHTS fails to load
Sean Rogers
srogers at msu.edu
Tue Oct 18 16:45:23 CEST 2011
Hello,
I have recently installed the package ArrayExpressHTS. However it fails
to load into R. Could someone tell me if this is something I can fix or
is it perhaps a conflict related to Mac OS X Lion?
Thanks for your help/suggestions.
Regards
Sean A. Rogers Ph. D.
Research Associate, Department of Horticulture
Michigan State University
East Lansing, Michigan USA 48824
library("ArrayExpressHTS")
Loading required package: sampling
Loading required package: MASS
Loading required package: lpSolve
Loading required package: Rsamtools
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: snow
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Library/Frameworks/R.framework/Versions/2.13/Resources/library/
ArrayExpressHTS/libs/x86_64/ArrayExpressHTS.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/
ArrayExpressHTS/libs/x86_64/ArrayExpressHTS.so, 6): Symbol not found: _bam_aux2i
Referenced from: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/
ArrayExpressHTS/libs/x86_64/ArrayExpressHTS.so
Expected in: dynamic lookup
Error: package/namespace load failed for 'ArrayExpressHTS'
sessionInfo()
R version 2.13.2 (2011-09-30)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] C/en_US.UTF-8/C/C/C/C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] snow_0.3-7 Rsamtools_1.4.3 Biostrings_2.20.4
[4] GenomicRanges_1.4.8 IRanges_1.10.6 sampling_2.4
[7] lpSolve_5.6.6 MASS_7.3-14
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.14.1 Biobase_2.12.2 DBI_0.2-5
...
[25] svMisc_0.9-63 tools_2.13.2 xtable_1.6-0
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