[BioC] "internal equal" overlap mode for GRangesList

[Sean Davis]

On Wed, Oct 26, 2011 at 8:33 AM, Michael Lawrence
<lawrence.michael at gene.com> wrote:
> Hi,
>
> I wonder if it's worth having some sort of "internal equal" overlap mode for
> two GRangesLists. This would check not for total equality between e.g. a set
> of spliced reads and an exonsBy() GRL but instead only check that the
> internal starts and ends are equal and that the query outer start and end
> fall inside the subject (indicating a compatible splicing pattern). I have
> some pretty inefficient code that filters a "within" overlap result to this,
> but it might be nice to have it inside the infrastructure.

+1 for this suggestion.

Sean