[BioC] Agi4x44PreProcess package: Error in build.est
Francois Pepin
francois.pepin at sequentainc.com
Mon Oct 10 20:15:34 CEST 2011
Hi Jon,
Have you tried Jeryk's suggestion in making sure that the name match? Right now they're not matching properly.
Francois
On Oct 9, 2011, at 7:13 , Jon Mohl wrote:
> Francois,
>
> Here is the results...
>
>> dim(targets)
> [1] 3 4
>> dim(tdPROC)
> [1] 41093 3
>
> And here are the filenames and the start of my tdPROC$G for comparison as well.
>
>> targets
> Slide.Number
> 1 1
> 2 2
> 3 3
>
>
> FileName
> 1 /Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_1_006_DS_EP
> 2 /Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_2_008_BR_LP
> 3 /Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_3_005_EC_NP
> Treatment GErep
> 1 EP 1
> 2 LP 2
> 3 NP 3
>> colnames(tdPROC$G)
> [1] "/Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_1_006_DS_EP"
> [2] "/Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_2_008_BR_LP"
> [3] "/Microarray_raw_data_Protein_Genomic/Agilent_Genomic/Tissue_Agilent_Genomic/US23502379_251485040308_S01_GE1-v5_91_0806_1_3_005_EC_NP"
>
> Thanks for trying to help,
>
> Jon Mohl
>
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