[BioC] PICS
Arnaud Droit
arnaud.droit at crchuq.ulaval.ca
Fri Oct 21 15:43:29 CEST 2011
Hi Julie,
It seems a problems with GSL.
Have you GSL installed on your environment ?
Thanks,
Arnaud.
Le 2011-10-21 à 09:39, Zhu, Lihua (Julie) a écrit :
> Dear PICS developers,
>
> I encountered problem loading PICS Version: 1.7.0. Could you please let me
> know how to fix this?
>
> Many thanks!
>
> Best regards,
>
> Julie
>
> library(PICS)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x
> 86_64/PICS.so':
>
> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/
> libs/x86_64/PICS.so, 6): Symbol not found: _gsl_blas_dgemv
> Referenced from:
> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x8
> 6_64/PICS.so
> Expected in: dynamic lookup
>
> Error: package/namespace load failed for ŒPICS¹
>
> sessionInfo()
> R version 2.14.0 beta (2011-10-17 r57293)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] grid stats graphics grDevices utils datasets methods
> base
>
> other attached packages:
> [1] ChIPpeakAnno_2.0.5 gplots_2.10.1
> [3] KernSmooth_2.23-6 caTools_1.12
> [5] bitops_1.0-4.1 gdata_2.8.2
> [7] gtools_2.6.2 limma_3.9.22
> [9] org.Hs.eg.db_2.6.3 GO.db_2.6.1
> [11] RSQLite_0.10.0 DBI_0.2-5
> [13] AnnotationDbi_1.15.38 BSgenome.Ecoli.NCBI.20080805_1.3.17
> [15] multtest_2.9.1 Biobase_2.13.11
> [17] biomaRt_2.9.3 BiocInstaller_1.1.28
> [19] ShortRead_1.11.44 latticeExtra_0.6-18
> [21] RColorBrewer_1.0-5 Rsamtools_1.5.76
> [23] lattice_0.19-33 BSgenome_1.21.7
> [25] Biostrings_2.21.11 GenomicRanges_1.5.51
> [27] IRanges_1.11.31
>
> loaded via a namespace (and not attached):
> [1] hwriter_1.3 MASS_7.3-16 RCurl_1.6-10
> rtracklayer_1.13.19 splines_2.14.0
> [6] survival_2.36-10 tools_2.14.0 XML_3.4-3
> zlibbioc_0.1.8
>
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