[BioC] PICS

[Zhu, Lihua (Julie)]

Arnaud,

Many thanks for your quick response and suggestions. After GSL and snowfall
installation, PICS can be loaded in R 32-bit environment. However it cannot
be loaded to R 64-bit environment ( x86_64-apple-darwin9.8.0/x86_64). Is
this expected? Thanks!

Best regards,

Julie


On 10/21/11 9:43 AM, "Arnaud Droit" <arnaud.droit at crchuq.ulaval.ca> wrote:

> Hi Julie,
> 
> It seems a problems with GSL.
> Have you GSL installed on your environment ?
> 
> Thanks,
> 
> Arnaud.
> 
> Le 2011-10-21 à 09:39, Zhu, Lihua (Julie) a écrit :
> 
>> Dear PICS developers,
>> 
>> I encountered problem loading PICS Version: 1.7.0. Could you please let me
>> know how to fix this?
>> 
>> Many thanks!
>> 
>> Best regards,
>> 
>> Julie
>> 
>> library(PICS)
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>> unable to load shared object
>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x
>> 86_64/PICS.so':
>> 
>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/
>> libs/x86_64/PICS.so, 6): Symbol not found: _gsl_blas_dgemv
>> Referenced from:
>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x8
>> 6_64/PICS.so
>> Expected in: dynamic lookup
>> 
>> Error: package/namespace load failed for ŒPICS¹
>> 
>> sessionInfo()
>> R version 2.14.0 beta (2011-10-17 r57293)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>> 
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>> 
>> attached base packages:
>> [1] grid      stats     graphics  grDevices utils     datasets  methods
>> base     
>> 
>> other attached packages:
>> [1] ChIPpeakAnno_2.0.5                  gplots_2.10.1
>> [3] KernSmooth_2.23-6                   caTools_1.12
>> [5] bitops_1.0-4.1                      gdata_2.8.2
>> [7] gtools_2.6.2                        limma_3.9.22
>> [9] org.Hs.eg.db_2.6.3                  GO.db_2.6.1
>> [11] RSQLite_0.10.0                      DBI_0.2-5
>> [13] AnnotationDbi_1.15.38               BSgenome.Ecoli.NCBI.20080805_1.3.17
>> [15] multtest_2.9.1                      Biobase_2.13.11
>> [17] biomaRt_2.9.3                       BiocInstaller_1.1.28
>> [19] ShortRead_1.11.44                   latticeExtra_0.6-18
>> [21] RColorBrewer_1.0-5                  Rsamtools_1.5.76
>> [23] lattice_0.19-33                     BSgenome_1.21.7
>> [25] Biostrings_2.21.11                  GenomicRanges_1.5.51
>> [27] IRanges_1.11.31
>> 
>> loaded via a namespace (and not attached):
>> [1] hwriter_1.3         MASS_7.3-16         RCurl_1.6-10
>> rtracklayer_1.13.19 splines_2.14.0
>> [6] survival_2.36-10    tools_2.14.0        XML_3.4-3
>> zlibbioc_0.1.8 
>> 
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> 
>