[BioC] PICS
Arnaud BioC
arnaud.droit at gmail.com
Fri Oct 21 19:29:04 CEST 2011
Hi Julie,
It should works also on R-64 environment.
Could you send me the error message and R session ?
I am using the same config (Apple 64 bit) as you.
Arnaud.
Le 2011-10-21 à 13:27, Zhu, Lihua (Julie) a écrit :
> Arnaud,
>
> Many thanks for your quick response and suggestions. After GSL and snowfall
> installation, PICS can be loaded in R 32-bit environment. However it cannot
> be loaded to R 64-bit environment ( x86_64-apple-darwin9.8.0/x86_64). Is
> this expected? Thanks!
>
> Best regards,
>
> Julie
>
>
> On 10/21/11 9:43 AM, "Arnaud Droit" <arnaud.droit at crchuq.ulaval.ca> wrote:
>
>> Hi Julie,
>>
>> It seems a problems with GSL.
>> Have you GSL installed on your environment ?
>>
>> Thanks,
>>
>> Arnaud.
>>
>> Le 2011-10-21 à 09:39, Zhu, Lihua (Julie) a écrit :
>>
>>> Dear PICS developers,
>>>
>>> I encountered problem loading PICS Version: 1.7.0. Could you please let me
>>> know how to fix this?
>>>
>>> Many thanks!
>>>
>>> Best regards,
>>>
>>> Julie
>>>
>>> library(PICS)
>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>> unable to load shared object
>>> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x
>>> 86_64/PICS.so':
>>>
>>> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/
>>> libs/x86_64/PICS.so, 6): Symbol not found: _gsl_blas_dgemv
>>> Referenced from:
>>> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/PICS/libs/x8
>>> 6_64/PICS.so
>>> Expected in: dynamic lookup
>>>
>>> Error: package/namespace load failed for ŒPICS¹
>>>
>>> sessionInfo()
>>> R version 2.14.0 beta (2011-10-17 r57293)
>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>>
>>> locale:
>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>
>>> attached base packages:
>>> [1] grid stats graphics grDevices utils datasets methods
>>> base
>>>
>>> other attached packages:
>>> [1] ChIPpeakAnno_2.0.5 gplots_2.10.1
>>> [3] KernSmooth_2.23-6 caTools_1.12
>>> [5] bitops_1.0-4.1 gdata_2.8.2
>>> [7] gtools_2.6.2 limma_3.9.22
>>> [9] org.Hs.eg.db_2.6.3 GO.db_2.6.1
>>> [11] RSQLite_0.10.0 DBI_0.2-5
>>> [13] AnnotationDbi_1.15.38 BSgenome.Ecoli.NCBI.20080805_1.3.17
>>> [15] multtest_2.9.1 Biobase_2.13.11
>>> [17] biomaRt_2.9.3 BiocInstaller_1.1.28
>>> [19] ShortRead_1.11.44 latticeExtra_0.6-18
>>> [21] RColorBrewer_1.0-5 Rsamtools_1.5.76
>>> [23] lattice_0.19-33 BSgenome_1.21.7
>>> [25] Biostrings_2.21.11 GenomicRanges_1.5.51
>>> [27] IRanges_1.11.31
>>>
>>> loaded via a namespace (and not attached):
>>> [1] hwriter_1.3 MASS_7.3-16 RCurl_1.6-10
>>> rtracklayer_1.13.19 splines_2.14.0
>>> [6] survival_2.36-10 tools_2.14.0 XML_3.4-3
>>> zlibbioc_0.1.8
>>>
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>>
>>
>
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