[BioC] \'mirna20probe
ATTIA [guest]
guest at bioconductor.org
Wed Oct 19 22:38:15 CEST 2011
H i there
I am reading cel files from genechip miRNA 2.0 array affymatrix in to affy package
spleen.affy = ReadAffy()
for gcrma I get
>gcrma(spleen.affy)
I get following error
[1] "Environment mirna20probe was not found in the
Error in get(probepackagename) : object 'mirna20probe' not found
where do I get that 'mirna20probe package
Thanks
-- output of sessionInfo():
> sessionInfo()
R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_Ireland.1252 LC_CTYPE=English_Ireland.1252 LC_MONETARY=English_Ireland.1252 LC_NUMERIC=C
[5] LC_TIME=English_Ireland.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] AnnotationDbi_1.14.1 limma_3.8.3 gcrma_2.24.1 puma_2.4.0 mclust_3.4.10 mirna20cdf_2.8.0 affy_1.30.0
[8] Biobase_2.12.2
loaded via a namespace (and not attached):
[1] affyio_1.20.0 Biostrings_2.20.3 DBI_0.2-5 IRanges_1.10.6 preprocessCore_1.14.0 RSQLite_0.10.0 splines_2.13.1
[8] tools_2.13.1
>
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