[BioC] perWindow chr coordinates (girafe)

[Karl Erhard]

Hi all,

I'd like to use the perWindow tool in the girafe package but am working
with a genome (maize) that is not accessible through standard annotation
packages available through BioC.

Does anyone know of an easy way to enter chromosome coordinates directly
in perWindow, as this seems to be the only annotation information that is
used?

Thanks in advance for any advice,

Karl Erhard
Graduate Student
UC Berkeley