[BioC] Problem with tkWidgets
Ignacio López de Ullibarri [guest]
guest at bioconductor.org
Mon Oct 3 12:46:44 CEST 2011
I have found a problem with the tkWidgets package. When executing readAffy(widget=TRUE), the CEL files are visible on the left panel of the widget, but no the compressed ones (i.e. those with names *.CEL.gz). This contradicts Figure 1 of the \'affy\' vignette of the affy package.
Is this actually a bug in the package? or could this be caused by some problem on my platform (Ubuntu 10.04)?
-- output of sessionInfo():
R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] tools tcltk stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] tkWidgets_1.30.0 DynDoc_1.30.0 widgetTools_1.30.0 affy_1.30.0
[5] Biobase_2.12.2
loaded via a namespace (and not attached):
[1] affyio_1.20.0 annotate_1.30.1 AnnotationDbi_1.14.1
[4] DBI_0.2-5 genefilter_1.34.0 limma_3.8.3
[7] marray_1.30.0 preprocessCore_1.14.0 RSQLite_0.10.0
[10] splines_2.13.1 survival_2.36-10 xtable_1.5-6
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