[BioC] Problem with tkWidgets

Ignacio López de Ullibarri [guest] guest at bioconductor.org
Mon Oct 3 12:46:44 CEST 2011


I have found a problem with the tkWidgets package. When executing readAffy(widget=TRUE), the CEL files are visible on the left panel of the widget, but no the compressed ones (i.e. those with names *.CEL.gz). This contradicts Figure 1 of the \'affy\' vignette of the affy package.

Is this actually a bug in the package? or could this be caused by some problem on my platform (Ubuntu 10.04)?

 -- output of sessionInfo(): 

R version 2.13.1 (2011-07-08)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] tools     tcltk     stats     graphics  grDevices utils    datasets 
[8] methods   base     

other attached packages:
[1] tkWidgets_1.30.0   DynDoc_1.30.0      widgetTools_1.30.0 affy_1.30.0       
[5] Biobase_2.12.2    

loaded via a namespace (and not attached):
 [1] affyio_1.20.0         annotate_1.30.1       AnnotationDbi_1.14.1 
 [4] DBI_0.2-5             genefilter_1.34.0     limma_3.8.3          
 [7] marray_1.30.0         preprocessCore_1.14.0 RSQLite_0.10.0       
[10] splines_2.13.1        survival_2.36-10      xtable_1.5-6    

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