[BioC] any package to do gene expression value estimation

[Martin Morgan]

On 10/25/2011 07:05 AM, wang peter wrote:
>     dear Martin:
>               your answer is quite clear. i will
>     try  Biostrings::matchPDict to map the reads of each sample to the
>     assembled transcriptome using those samples.
>
>               but what i worrry is the efficiency. i can also use BWA OR
>     bowtie to do so.
>
>     i donot know if Biostrings::matchPDict  will be very slow?

matchPDict would not be my first choice; it will consume a lot of memory 
and will not be as flexible as some aligners.

Martin

>
>     thank you
>
>     shan gao
>


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