[BioC] DNase Seq Analysis using R
Sean Davis
sdavis2 at mail.nih.gov
Tue Oct 18 18:12:09 CEST 2011
Hi, Sam.
You can get a long way by treating these data as chip-seq data (though
this isn't quite the correct model most of the time), at least for a
high-level view of things. Here is a listing of available options:
http://bioconductor.org/packages/2.8/BiocViews.html#___ChIPseq
Sean
On Tue, Oct 18, 2011 at 11:50 AM, Samarjeet <p.samar.j at gmail.com> wrote:
> Hi ,
> Can anyone tell me if there are packages available for Dnase Seq analysis
> on R. I have two samples in the bam format (along with their index files)
> and I would like to do downstream analysis such as finding the significance
> of the association of sites to the adjoining genes and so on.
> Thanks in advance.
>
> Sam
>
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