April 2008 Archives by thread

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Starting: Tue Apr 1 00:50:45 CEST 2008
Ending: Wed Apr 30 23:50:50 CEST 2008
Messages: 397

• [BioC] row.names in the latest vsn   Wolfgang Huber
  • [BioC] row.names in the latest vsn   Roumyana Yordanova
• [BioC] basic limma questions   Gordon K Smyth
  • [BioC] basic limma questions   Endre Sebestyen
• [BioC] hierarchical clustering data after LIMMA - agilent two color   Adrian Johnson
  • [BioC] hierarchical clustering data after LIMMA - agilent two color   David Ruau
• [BioC] Exonarrays: probeset annotation in exonmap   De Bondt, An-7114 [PRDBE]
• [BioC] topGO enrichment using ensembl gene list   Adrian Alexa
• [BioC] ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :   Langdon W B
  • [BioC] ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :   Martin Morgan
• [BioC] topGO and GOstats conflict   Adrian Alexa
• [BioC] GOstats - hyperGTest using "KEGGHyperGParams"   Gábor Csárdi
• [BioC] info on chunkwise analysis   weiliang Qiu
  • [BioC] info on chunkwise analysis   Henrik Bengtsson
    • [BioC] info on chunkwise analysis   weiliang Qiu
• [BioC] GOstats - hyperGTest using "KEGGHyperGParams"   Paul Evans
  • [BioC] GOstats - hyperGTest using "KEGGHyperGParams"   Robert Gentleman
• [BioC] plot multiple genes over time   Mark Kimpel
• [BioC] Remove from package-list   Kathy Duncan
  • [BioC] Remove from package-list   James MacDonald
    • [BioC] Remove from package-list   Kathy Duncan
• [BioC] Multiple gal files   Christina Tigress
• [BioC] two histograms in one graph   s.khalid at qmul.ac.uk
  • [BioC] two histograms in one graph   Tobias Straub
    • [BioC] two histograms in one graph   Artur Veloso
      • [BioC] two histograms in one graph   s.khalid at qmul.ac.uk
• [BioC] running vsn from Limma   Catherine Juste
  • [BioC] running vsn from Limma   Joern Toedling
• [BioC] R/S+ course in *** New York City *** April 28-29 by XLSolutions Corp   Sue Turner
• [BioC] stability of gene lists with gcrma and limma upon changing the number of samples in the normalization   Richard Friedman
  • [BioC] stability of gene lists with gcrma and limma upon changing the number of samples in the normalization   Sean Davis
• [BioC] Trouble installing "preprocessCore" on 32 bit debian Linux   Sonia Ting
  • [BioC] Trouble installing "preprocessCore" on 32 bit debian Linux   Sean Davis
• [BioC] Random Matrices   Matthew R. Helmus
  • [BioC] Random Matrices   Sean Davis
    • [BioC] Random Matrices   Matthew R. Helmus
      • [BioC] Random Matrices   Sean Davis
      • [BioC] Random Matrices   Houston Gilbert
      • [BioC] Random Matrices   Gregory. R. Warnes
• [BioC] Webbioc error exprSet vs expressionSet   Balasubramanian Ganesan
  • [BioC] Webbioc error exprSet vs expressionSet   Martin Morgan
    • [BioC] Webbioc error exprSet vs expressionSet   Balasubramanian Ganesan
  • [BioC] Webbioc error exprSet vs expressionSet   Balasubramanian Ganesan
• [BioC] limma, 2 color factorial design.   Khan, Sohail
• [BioC] Normalization between arrays for common reference, time course and direct two color designs   Bryan Clarkson
• [BioC] Bioconductor Digest, Vol 62, Issue 3   Abhilash Venu
• [BioC] Agilent spike-in probes   Srinivas Iyyer
  • [BioC] Agilent spike-in probes   Sean Davis
• [BioC] Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]   Sean Davis
• [BioC] Methodological question to process cDNA arrays using common reference design with dye-swap   Ng Stanley
• [BioC] Help with sub setting data frame of DE genes   Ochsner, Scott A
  • [BioC] Help with sub setting data frame of DE genes   Joern Toedling
• [BioC] Call for comments on analyzing aCGH data with huge number of probes on a single chromosome   pingzhao Hu
  • [BioC] Call for comments on analyzing aCGH data with huge number of probes on a single chromosome   Sean Davis
    • [BioC] Call for comments on analyzing aCGH data with huge number of probes on a single chromosome   pingzhao Hu
      • [BioC] Call for comments on analyzing aCGH data with huge number of probes on a single chromosome   William Shannon
      • [BioC] Call for comments on analyzing aCGH data with huge number of probes on a single chromosome   Sean Davis
      • [BioC] Call for comments on analyzing aCGH data with huge number of probes on a single chromosome   pingzhao Hu
• [BioC] Clustering question   Adrian Johnson
• [BioC] Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]   Sean Davis
  • [BioC] Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]   Abhilash Venu
    • [BioC] Single channel CGH analysis [was Re: Bioconductor Digest, Vol 62, Issue 3]   Sean Davis
• [BioC] lumi: subset of QC slot in LumiBatch object   Pan Du
• [BioC] Analyst Positions for Deep-Sequencing Facility   Thomas Girke
• [BioC] Good Collection of Important Websites   Sonia
• [BioC] World's Most Effective Mind Power Course [1Book + 2CDs]   MIND POWER
• [BioC] package for nimblegen aCGH data analysis   DengXiangyu
  • [BioC] package for nimblegen aCGH data analysis   Sean Davis
• [BioC] LOH calls by chromosome   Olivier Nuñez
• [BioC] Reference individual array in abatch after changing pData   Paul Geeleher
  • [BioC] Reference individual array in abatch after changing pData   Martin Morgan
    • [BioC] Reference individual array in abatch after changing pData   Paul Geeleher
• [BioC] Still confused on how to identify differentially expressed genes using limma   Stanley Ng
• [BioC] Heatmap color Key   Gregory Warnes
• [BioC] LOH calls by chromosome (2)   Olivier Nuñez
• [BioC] readBeadSummaryData problem- duplicate row name error   Keyel, Peter
  • [BioC] readBeadSummaryData problem- duplicate row name error   Johnstone, Alice
• [BioC] Help needed on limma and differentially expressed genes   Ng Stanley
  • [BioC] Help needed on limma and differentially expressed genes   Jenny Drnevich
    • [BioC] Help needed on limma and differentially expressed genes   Stanley Ng
      • [BioC] Help needed on limma and differentially expressed genes   J.delasHeras at ed.ac.uk
      • [BioC] Help needed on limma and differentially expressed genes   Stanley Ng
• [BioC] plotDensities   Francesco Strozzi
  • [BioC] plotDensities   Sean Davis
  • [BioC] plotDensities   Melissa Morine
• [BioC] Spearman confidence   s.khalid at qmul.ac.uk
• [BioC] single-channel genepix tiling array with limma   Joseph Fass
• [BioC] For Illumina microarray users (Illumina changed ProbeID in the new Version)   Pan Du
• [BioC] advice in building GOALLENTREZID {GO}   Vladimir Morozov
  • [BioC] advice in building GOALLENTREZID {GO}   Marc Carlson
    • [BioC] advice in building GOALLENTREZID {GO}   Vladimir Morozov
      • [BioC] advice in building GOALLENTREZID {GO}   Marc Carlson
      • [BioC] advice in building GOALLENTREZID {GO}   Vladimir Morozov
      • [BioC] advice in building GOALLENTREZID {GO}   Robert Gentleman
      • [BioC] advice in building GOALLENTREZID {GO}   Vladimir Morozov
• [BioC] mouse4302,db_2.0.2 in AffylmGUI   Richard Friedman
  • [BioC] mouse4302,db_2.0.2 in AffylmGUI   Keith Satterley
    • [BioC] mouse4302,db_2.0.2 in AffylmGUI #2   Richard Friedman
      • [BioC] mouse4302,db_2.0.2 in AffylmGUI #2   Keith Satterley
• [BioC] How does limma know how to correct dye effect with a column of "1"s   Ng Stanley
  • [BioC] How does limma know how to correct dye effect with a column of "1"s   Claus-Dieter Mayer
• [BioC] R help with large matrices   Ian Roberts
  • [BioC] R help with large matrices   Sean Davis
    • [BioC] R help with large matrices   Ian Roberts
      • [BioC] R help with large matrices   Atro Tossavainen
• [BioC] Postdoc in Computational Systems Biology   Jan T. Kim
• [BioC] how to cite "lumi"?   Pan Du
• [BioC] Reporting results of HyperGTest   Paolo Innocenti
  • [BioC] Reporting results of HyperGTest   Pankaj Chopra
• [BioC] (no subject)   Paul Evans
  • [BioC] (no subject)   Robert Gentleman
• [BioC] too many biomaRt connections   Elizabeth Purdom
  • [BioC] too many biomaRt connections   Kasper Daniel Hansen
    • [BioC] too many biomaRt connections   Steffen
    • [BioC] too many biomaRt connections   Elizabeth Purdom
  • [BioC] too many biomaRt connections   Steffen
    • [BioC] too many biomaRt connections   Sean Davis
• [BioC] add to biocoductor mailing list   zhaoshi
  • [BioC] add to biocoductor mailing list   Martin Morgan
• [BioC] Affy data   Kathy Duncan
  • [BioC] Affy data   James MacDonald
    • [BioC] Affy data   Kathy Duncan
      • [BioC] Affy data   James W. MacDonald
• [BioC] affyio install deps   Caroline Johnston
• [BioC] A question about hopach2tree   Yurong Xin
• [BioC] Agilent IDs and biomaRt package   Gonzalo Gómez
  • [BioC] Agilent IDs and biomaRt package   Sean Davis
  • [BioC] Agilent IDs and biomaRt package   Cei Abreu-Goodger
• [BioC] Agilent IDs and biomaRt package   Sean Davis
• [BioC] ExpressionSet subsetting problem   IAIN GALLAGHER
  • [BioC] ExpressionSet subsetting problem   Martin Morgan
• [BioC] Agilent IDs and biomaRt package   Sean Davis
• [BioC] default fdr rate in limma/affylmgui   k. brand
  • [BioC] default fdr rate in limma/affylmgui   James W. MacDonald
• [BioC] Problem using Limma for 2-channel Agilent time course data with insufficient replicates?   gary speight
• [BioC] matching transcription factor binding sites   Hans-Ulrich Klein
  • [BioC] matching transcription factor binding sites   Herve Pages
    • [BioC] matching transcription factor binding sites   Hans-Ulrich Klein
      • [BioC] matching transcription factor binding sites   Herve Pages
• [BioC] can't load Rgraphviz under BioC 2.2 devel version   Luo Weijun
  • [BioC] can't load Rgraphviz under BioC 2.2 devel version   Florian Hahne
• [BioC] a package for converting coordinates?   Andrew Yee
  • [BioC] a package for converting coordinates?   Sean Davis
• [BioC] False Discovery Rate Questions   Sally
  • [BioC] False Discovery Rate Questions   James W. MacDonald
    • [BioC] False Discovery Rate Questions   Claus-Dieter Mayer
• [BioC] Limma: import files with genes missing   Daniel Brewer
• [BioC] Limma: import files with genes missing   Gordon K Smyth
• [BioC] Limma: import files with genes missing   Gordon Smyth
• [BioC] Limma: normalizeBetweenArray and Tquantile   Ng Stanley
• [BioC] Limma and vennDiagram   Ng Stanley
  • [BioC] Limma and vennDiagram   Francois Pepin
• [BioC] Biostrings and A. thaliana genome sequence   Rene Dreos (JIC)
  • [BioC] Biostrings and A. thaliana genome sequence   Herve Pages
    • [BioC] Biostrings and A. thaliana genome sequence   Rene Dreos (JIC)
      • [BioC] Biostrings and A. thaliana genome sequence   Joern Toedling
      • [BioC] Biostrings and A. thaliana genome sequence   Herve Pages
• [BioC] getGene function in biomaRt   Sean Davis
• [BioC] Retrieving genes by their genome locations in biomart   Sergii Ivakhno
• [BioC] Retrieving genes by their genome locations in biomart   Steffen Durinck
• [BioC] save R graphics device output in a file   carol white
  • [BioC] save R graphics device output in a file   Florian Hahne
    • [BioC] save R graphics device output in a file   carol white
      • [BioC] save R graphics device output in a file   Sean Davis
      • [BioC] save R graphics device output in a file   carol white
      • [BioC] save R graphics device output in a file   Florian Hahne
• [BioC] oligo with pd.genomewidesnp.6 library error   Sergii Ivakhno
• [BioC] info su illumina   Casey Romanoski
• [BioC] combining p-values for multiple genes using stouffer   william ritchie
  • [BioC] combining p-values for multiple genes using stouffer   Sean Davis
• [BioC] combining p-values and independent genes stouffer   william ritchie
• [BioC] FW: limma for 2 color data   Afsaneh
• [BioC] FW: limma for 2 color data   Sean Davis
• [BioC] Simpleaffy Error: the following are not valid files   Boel Brynedal
• [BioC] FW: limma for 2 color data   Sean Davis
• [BioC] published studies with technical replicates   Adaikalavan Ramasamy
  • [BioC] published studies with technical replicates   Christos Hatzis
    • [BioC] published studies with technical replicates   Sean Davis
• [BioC] simpleAffy with bovine cdf   Paul Geeleher
  • [BioC] simpleAffy with bovine cdf   Paul Geeleher
• [BioC] FW: limma for 2 color data   Sean Davis
• [BioC] buildChromLocation with Drosophila2 Affy arrays   Blanchette, Marco
• [BioC] info su illumina   Pan Du
• [BioC] Spot IDs for pedbarray Packages   Francesco Favero
  • [BioC] Spot IDs for pedbarray Packages   Marc Carlson
• [BioC] gene level on exon chip?   Paul Hammer
  • [BioC] gene level on exon chip?   cstrato
    • [BioC] gene level on exon chip?   Mark Robinson
• [BioC] Limma: normalizeBetweenArray and Tquantile   Gordon K Smyth
• [BioC] Limma: How to set title for imageplot, plotPrintTipLoess and plotDensities ?   Ng Stanley
  • [BioC] Limma: How to set title for imageplot, plotPrintTipLoess and plotDensities ?   Marcelo Laia
    • [BioC] Limma: How to set title for imageplot, plotPrintTipLoess and plotDensities ?   Ng Stanley
      • [BioC] Limma: How to set title for imageplot, plotPrintTipLoess and plotDensities ?   Marcelo Laia
• [BioC] Removing control probes and treating technical replicates in Agilent one colour data   eldridb at stud.ntnu.no
• [BioC] affy mouse promoter tiling array analysis   Yanqin Yang
  • [BioC] affy mouse promoter tiling array analysis   Joern Toedling
• [BioC] Two Computational Biology / Bioinformatics Positions, University of Cambridge, UK   Krys Kelly
• [BioC] Limma_Agilent_2color_Array   Abhilash Venu
  • [BioC] Limma_Agilent_2color_Array   Wolfgang Huber
    • [BioC] Limma_Agilent_2color_Array   Abhilash Venu
      • [BioC] Limma_Agilent_2color_Array   Wolfgang Huber
      • [BioC] Limma_Agilent_2color_Array   Abhilash Venu
      • [BioC] Limma_Agilent_2color_Array   Wolfgang Huber
• [BioC] Bioinformatics Positions, M. D. Anderson Cancer Center   caiwei at mdanderson.org
• [BioC] mouse4302.db vs mouse 4302   Richard Friedman
  • [BioC] mouse4302.db vs mouse 4302   Herve Pages
  • [BioC] mouse4302.db vs mouse 4302   Marc Carlson
    • [BioC] mouse4302.db vs mouse 4302   Gábor Csárdi
      • [BioC] mouse4302.db vs mouse 4302   James W. MacDonald
• [BioC] Genefinder method   Lana Schaffer
  • [BioC] Genefinder method   James W. MacDonald
• [BioC] Unable to use GEOquery   Juan C Oliveros Collazos
• [BioC] Error when doing RNA deg plot on Estrogen data.   Paul Geeleher
  • [BioC] Error when doing RNA deg plot on Estrogen data.   Keith Satterley
• [BioC] GOstats gene set size selection   alex lam (RI)
  • [BioC] GOstats gene set size selection   Sean MacEachern
  • [BioC] GOstats gene set size selection   Robert Gentleman
• [BioC] limma - design matrix for time series   Sebastian Mueller
  • [BioC] limma - design matrix for time series   Naomi Altman
• [BioC] agilent zebrafish array annotation   Georg Otto
  • [BioC] agilent zebrafish array annotation   Marc Carlson
    • [BioC] agilent zebrafish array annotation   Georg Otto
• [BioC] Installation on a cluster   Daniel Davidson
  • [BioC] Installation on a cluster   Sean Davis
• [BioC] Unable to use GEOquery (SOLVED)   Juan C Oliveros Collazos
  • [BioC] Unable to use GEOquery (SOLVED)   Sean Davis
• [BioC] LIMMA one color agilent array normalization   marco zucchelli
• [BioC] Differential expression in time series   Sanjat Kanjilal
  • [BioC] Differential expression in time series   James W. MacDonald
    • [BioC] Differential expression in time series   Hyungwon Choi
      • [BioC] Differential expression in time series   James W. MacDonald
• [BioC] How to convert oligoClass object to ExpressionSet object?   Yanqin Yang
• [BioC] Creating the cusotm CDF file package in R - windows.   Hamid Ashrafi
  • [BioC] Creating the cusotm CDF file package in R - windows.   lgautier at altern.org
• [BioC] Problem when running check   Kenneth Lo
  • [BioC] Problem when running check   Martin Morgan
    • [BioC] Problem when running check   Kenneth Lo
• [BioC] Installation on a cluster   Claudio Lottaz
  • [BioC] Installation on a cluster   Sean Davis
    • [BioC] Installation on a cluster   Atro Tossavainen
• [BioC] CDF Package installation   Jenny Drnevich
• [BioC] CDF Package installation   Jenny Drnevich
• [BioC] how to add a common legend to a 2 plots in a row?   carol white
  • [BioC] how to add a common legend to a 2 plots in a row?   James W. MacDonald
  • [BioC] how to add a common legend to a 2 plots in a row?   Wolfgang Huber
• [BioC] probe lengths in annotation packages   Michael Lawrence
  • [BioC] probe lengths in annotation packages   James W. MacDonald
• [BioC] QC - Illumina chip - Lumi Package   Yogi Sundaravadanam
  • [BioC] QC - Illumina chip - Lumi Package   Sean Davis
    • [BioC] QC - Illumina chip - Lumi Package   Yogi Sundaravadanam
      • [BioC] QC - Illumina chip - Lumi Package   Sean Davis
• [BioC] obtaining genes responsible for over-representation of GO term - GOstats   Srinivas Iyyer
  • [BioC] obtaining genes responsible for over-representation of GO term - GOstats   James W. MacDonald
• [BioC] [Fwd: Re: gene level on exon chip?]   Paul Hammer
  • [BioC] [Fwd: Re: gene level on exon chip?]   cstrato
    • [BioC] [Fwd: Re: gene level on exon chip?]   Steve Piccolo
  • [BioC] [Fwd: Re: gene level on exon chip?]   Michal Okoniewski
• [BioC] Promotor enrichment analysis   Benjamin Otto
• [BioC] Problems loading Rgraphviz package under Windows XP   Jasmina Bogojeska
  • [BioC] Problems loading Rgraphviz package under Windows XP   Sean Davis
    • [BioC] Problems loading Rgraphviz package under Windows XP   Jasmina Bogojeska
      • [BioC] Problems loading Rgraphviz package under Windows XP   Martin Morgan
• [BioC] Limma A Mean   Henrique Proença
• [BioC] How to average over duplicate spots [Was: Re: technical replicates and spots in limma]   Sanjat Kanjilal
• [BioC] GOstats gene set size selection   Assaf Oron
• [BioC] D e ntists Contact List in the USA   Penn tuxedo
• [BioC] Limma: What scenarios for converting dual channel to single channel analysis besides those in the user guide ?   Ng Stanley
  • [BioC] Limma: What scenarios for converting dual channel to single channel analysis besides those in the user guide ?   Naomi Altman
• [BioC] Agilent control probes   Kasper Daniel Hansen
  • [BioC] Agilent control probes   Sean Davis
• [BioC] Agilent_single_channel   Abhilash Venu
  • [BioC] Agilent_single_channel   Sean Davis
    • [BioC] Agilent_single_channel   Abhilash Venu
• [BioC] Properties.   Al Juna
• [BioC] How do I convert the output of Limma:eBayes into a matrix ?   Ng Stanley
  • [BioC] How do I convert the output of Limma:eBayes into a matrix ?   Sean Davis
    • [BioC] How do I convert the output of Limma:eBayes into a matrix ?   Ng Stanley
• [BioC] SAM analysis : samr package vs siggenes package   Cécile Laurent
  • [BioC] SAM analysis : samr package vs siggenes package   Holger Schwender
    • [BioC] SAM analysis : samr package vs siggenes package   Cécile Laurent
      • [BioC] SAM analysis : samr package vs siggenes package   Holger Schwender
• [BioC] Newbie: Problems installing bioconductor   Zembower, Kevin
  • [BioC] Newbie: Problems installing bioconductor   Wolfgang Huber
    • [BioC] Newbie: Problems installing bioconductor   Zembower, Kevin
• [BioC] Changing significance levels in ks.test   Shripad Sinari
• [BioC] Help on Loading AgilentData into LIMMA   Wendy Chen
• [BioC] Help on Loading AgilentData into LIMMA   Wendy Chen
  • [BioC] Help on Loading AgilentData into LIMMA   Jarno Tuimala
    • [BioC] Help on Loading AgilentData into LIMMA   Wendy Chen
      • [BioC] Help on Loading AgilentData into LIMMA   Jarno Tuimala
• [BioC] Changing margins on a boxplot   Al Ivens
  • [BioC] Changing margins on a boxplot   Jarno Tuimala
    • [BioC] Changing margins on a boxplot   Al Ivens
• [BioC] Properties.   Al Juna
• [BioC] Merging microarray datasets   Kathy Duncan
  • [BioC] Merging microarray datasets   Robert Gentleman
    • [BioC] Merging microarray datasets   Kathy Duncan
      • [BioC] Merging microarray datasets   Adaikalavan Ramasamy
      • [BioC] Merging microarray datasets   Kort, Eric
      • [BioC] Merging microarray datasets   Kathy Duncan
      • [BioC] Merging microarray datasets   lgautier at altern.org
      • [BioC] Merging microarray datasets   Adaikalavan Ramasamy
• [BioC] pm mm intensity plot   Almassy Balazs Mihaly
  • [BioC] pm mm intensity plot   Wolfgang Huber
• [BioC] Contrast matrices in limma   Dejian Zhao
• [BioC] LIMMA_Agilent   Abhilash Venu
  • [BioC] LIMMA_Agilent   Gordon K Smyth
    • [BioC] LIMMA_Agilent   Abhilash Venu
• [BioC] Tiling arrays and their probes   Steve Lianoglou
  • [BioC] Tiling arrays and their probes   Naira Naouar
  • [BioC] Tiling arrays and their probes   Wolfgang Huber
    • [BioC] Tiling arrays and their probes   Steve Lianoglou
• [BioC] Question about F test in limma   Lisa Mijung Chung
• [BioC] Question about F test in limma   Lisa Mijung Chung
  • [BioC] Question about F test in limma   Claus-Dieter Mayer
    • [BioC] Question about F test in limma   Lisa Mijung Chung
• [BioC] Detection slot - Lumi   Yogi Sundaravadanam
  • [BioC] GEOquery doubt: converting GDS into a MAlist   Juan C Oliveros Collazos
    • [BioC] GEOquery doubt: converting GDS into a MAlist   Sean Davis
• [BioC] rma subscript out of bounds with Rat Exon data   Rob Dunne
  • [BioC] rma subscript out of bounds with Rat Exon data   Crispin Miller
    • [BioC] rma subscript out of bounds with Rat Exon data   Rob Dunne
      • [BioC] rma subscript out of bounds with Rat Exon data   Crispin Miller
• [BioC] to create a random graph   jiabao xu
  • [BioC] to create a random graph   lgautier at altern.org
    • [BioC] to create a random graph   Gábor Csárdi
      • [BioC] to create a random graph   Robert Gentleman
• [BioC] normalizeWithinArrays error   Uthandaraman Mahalingaraja
• [BioC] Example of converting graphNEL object to ajacency matrix?   Zembower, Kevin
  • [BioC] Example of converting graphNEL object to ajacency matrix?   Gábor Csárdi
  • [BioC] Example of converting graphNEL object to ajacency matrix?   Robert Gentleman
    • [BioC] Example of converting graphNEL object to ajacency matrix?   Zembower, Kevin
      • [BioC] Example of converting graphNEL object to ajacency matrix?   Robert Gentleman
• [BioC] Detection slot - Lumi   Pan Du
• [BioC] to create a random graph   Gábor Csárdi
• [BioC] Merging microarray datasets   pingzhao Hu
• [BioC] How to properly call justPlier?   Michal Blazejczyk
• [BioC] information about PROcess package   cipriano at unisi.it
• [BioC] a question about exonmap   Xin Zheng
  • [BioC] a question about exonmap   Crispin Miller
• [BioC] limma contrast matrices   Dejian Zhao
• [BioC] limma contrast matrices   Dejian Zhao
• [BioC] combining HGU133a2 and U133plus2 chips   Anne
  • [BioC] combining HGU133a2 and U133plus2 chips   David Ruau
• [BioC] Flipping labels on bottom of boxplot   Paul Geeleher
  • [BioC] Flipping labels on bottom of boxplot   Kort, Eric
  • [BioC] Flipping labels on bottom of boxplot   Ido M. Tamir
  • [BioC] Flipping labels on bottom of boxplot   Sylvia Merk
• [BioC] Flipping labels on bottom of boxplot   Paul Geeleher
• [BioC] modify colClasses in read.columns?   Henrik Parn
  • [BioC] modify colClasses in read.columns?   Herve Pages
    • [BioC] modify colClasses in read.columns?   Henrik Parn
      • [BioC] modify colClasses in read.columns?   Wolfgang Huber
      • [BioC] modify colClasses in read.columns?   Gordon K Smyth
• [BioC] Bug report: Help pages for degree (package graph) not displayed   Zembower, Kevin
  • [BioC] Bug report: Help pages for degree (package graph) not displayed   Martin Morgan
    • [BioC] Bug report: Help pages for degree (package graph) not displayed   Patrick Aboyoun
• [BioC] Package for Illumina Human CNV 370 data   Tapan Mehta
• [BioC] MAANOVA - how to collapse replicate spots   Cecilia McGregor
  • [BioC] MAANOVA - how to collapse replicate spots   Marcelo Laia
• [BioC] Merging microarray datasets   Kathy Duncan
• [BioC] annaffy w/yeast2   Sebastien Gerega
• [BioC] How to get all genes in the summary table of siggenes SAM   Wayne Xu
• [BioC] Normalization of single color Agilent Arrays   Lana Schaffer
• [BioC] correlation method in genefinder   Lana Schaffer
• [BioC] spot format weights normalization   Henrique Proença
• [BioC] Error in rma When Using Temp File from xps Package   Stephen Piccolo
  • [BioC] Error in rma When Using Temp File from xps Package   Wolfgang Huber
  • [BioC] Error in rma When Using Temp File from xps Package   cstrato
• [BioC] Bioconductor and R 2.7   Steve Lianoglou
  • [BioC] Bioconductor and R 2.7   Tony Chiang
    • [BioC] Bioconductor and R 2.7   Patrick Aboyoun
  • [BioC] Bioconductor and R 2.7   Wolfgang Huber
    • [BioC] Bioconductor and R 2.7   aaron.j.mackey at gsk.com
      • [BioC] Bioconductor and R 2.7   Herve Pages
      • [BioC] Bioconductor and R 2.7   Herve Pages
    • [BioC] Bioconductor and R 2.7   Christian Kohler
      • [BioC] Bioconductor and R 2.7   Wolfgang Huber
      • [BioC] Bioconductor and R 2.7   Christian Kohler
      • [BioC] Bioconductor and R 2.7   Martin Morgan
      • [BioC] Bioconductor and R 2.7   Martin Morgan
• [BioC] Course*** R/S-Plus Advanced Programming ****by XLSolutions Corp / May 2008 in San Francisco   Sue Turner
• [BioC] Screeplot in puma package   Paul Geeleher
  • [BioC] Screeplot in puma package   Richard Pearson
• [BioC] Creating an exprSet object with agilent single colour   Wendy Chen
• [BioC] MICROARRAY AND R COURSES at Imperial College London, during May 2008   North, Bernard V
• [BioC] error when use splicing.index with by.thip=T of exonmap   Xin Zheng
• [BioC] Cutoff for non-specific gene filtering?   Suraj Menon
  • [BioC] Cutoff for non-specific gene filtering?   Sean Davis
  • [BioC] Cutoff for non-specific gene filtering?   Robert Gentleman
• [BioC] bugs in exonmap?   Xin Zheng
• [BioC] Illumina annotation human v3   Ingrid H. G. Østensen
  • [BioC] Illumina annotation human v3   Marc Carlson
• [BioC] ExpressionSet or MAList   Daniel Brewer
  • [BioC] ExpressionSet or MAList   Martin Morgan
• [BioC] Separate function edit window in Linux   Daniel Brewer
  • [BioC] Separate function edit window in Linux   Ramon Diaz-Uriarte

Last message date: Wed Apr 30 23:50:50 CEST 2008
Archived on: Wed Apr 30 23:51:30 CEST 2008

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