[BioC] matching transcription factor binding sites

Hans-Ulrich Klein h.klein at uni-muenster.de
Fri Apr 11 21:41:25 CEST 2008


Dear all,

I want to locate transcription factor binding sites (tfbs) within a 
given sequence. The tfbs are derived from databases like transfac or 
jaspar and are described by matrices. Are there algorithms for locating 
tfbs matches (e.g. "matinspector") implemented in bioconductor? I could 
not find one.

Regards,
Hans-Ulrich



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