[BioC] Creating the cusotm CDF file package in R - windows.

lgautier at altern.org lgautier at altern.org
Fri Apr 18 11:41:43 CEST 2008


Check
http://www.murdoch-sutherland.com/Rtools/


> Hi All,
>
> I need to create  CDF package for R- windows XP. Rafael Irizarry has
> suggested that it is not easy. when I did it I got the following error
> message. I have installed R-tools in my C:\.There is supposed to be a link
> explaining how to this referred by  Irizarry which is no longer working.
> http://www.stats.ox.ac.uk/pub/R/rw-FAQ.html
>
> I am just wondering if anyone has any idea or have had the same problem.
>
> Hamid
>
>> library(affy)
> Loading required package: Biobase
> Loading required package: tools
>
> Welcome to Bioconductor
>
>   Vignettes contain introductory material. To view, type
>   'openVignette()'. To cite Bioconductor, see
>   'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: affyio
>> library(makecdfenv)
>>  make.cdf.package("pepperb520549.cdf", cdf.path = ("C:/Temp"),
>> unlink=TRUE, compress = FALSE, author = "SBC", maintainer = " PRB
>> <avandeynze at ucdavis.edu>", version = "0.0.1", species = "Capsicum")
> Creating package in C:/Documents and Settings/ashrafi/My Documents/Pepper
> Project/Chip_Analysis/pepperb520549cdf
> [1] "pepperb520549cdf"
> Warning message:
> incomplete final line found by readLines on 'C:/Documents and Settings/
>
>
>
>
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