[BioC] Bug report: Help pages for degree (package graph) not displayed

Zembower, Kevin kzembowe at jhuccp.org
Fri Apr 25 22:24:14 CEST 2008


I just installed Windows version 2.7.0 of R, and version 1.17.17 of
graph. When I typed "?degree" after loading the graph library, I got the
error: 'Error in
print.help_files_with_topic("C:/R/R-2.7.0/library/graph/chm/graph-class"
) : CHM file could not be displayed'

The output of these steps is shown below. Please let me know if you have
any questions. The maintainer of the 'graph' package suggested I report
this bug to the BioC list, to allow testing in a Windows environment.

-Kevin

Kevin Zembower
Internet Services Group manager
Center for Communication Programs
Bloomberg School of Public Health
Johns Hopkins University
111 Market Place, Suite 310
Baltimore, Maryland  21202
410-659-6139
=======================================
> biocLite("graph")
Running biocinstall version 2.2.7 with R version 2.7.0 Your version of R
requires version 2.2 of BioConductor.
trying URL
'http://bioconductor.org/packages/2.2/bioc/bin/windows/contrib/2.7/graph
_1.17.17.zip'
Content type 'application/zip' length 811763 bytes (792 Kb) opened URL
downloaded 792 Kb

package 'graph' successfully unpacked and MD5 sums checked

The downloaded packages are in
        C:\Documents and Settings\KZEMBOWE\Local
Settings\Temp\RtmpLl91qQ\downloaded_packages
updating HTML package descriptions

<snip installing SNAData and RBGL>

> library("graph")
> ?degree
Error in
print.help_files_with_topic("C:/R/R-2.7.0/library/graph/chm/graph-class"
) : 
  CHM file could not be displayed
> help("degree", package="graph")
Error in
print.help_files_with_topic("C:/R/R-2.7.0/library/graph/chm/graph-class"
) : 
  CHM file could not be displayed
> sessionInfo()
R version 2.7.0 (2008-04-22) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


other attached packages:
[1] SNAData_1.8.0 graph_1.17.17

loaded via a namespace (and not attached):
[1] cluster_1.11.10 tools_2.7.0    
> 



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