[BioC] Bug report: Help pages for degree (package graph) not displayed

[Martin Morgan]

Thanks Kevin, I think this is a problem with our build system here in
Seattle, and it'll be corrected before the release. Martin

"Zembower, Kevin" <kzembowe at jhuccp.org> writes:

> I just installed Windows version 2.7.0 of R, and version 1.17.17 of
> graph. When I typed "?degree" after loading the graph library, I got the
> error: 'Error in
> print.help_files_with_topic("C:/R/R-2.7.0/library/graph/chm/graph-class"
> ) : CHM file could not be displayed'
>
> The output of these steps is shown below. Please let me know if you have
> any questions. The maintainer of the 'graph' package suggested I report
> this bug to the BioC list, to allow testing in a Windows environment.
>
> -Kevin
>
> Kevin Zembower
> Internet Services Group manager
> Center for Communication Programs
> Bloomberg School of Public Health
> Johns Hopkins University
> 111 Market Place, Suite 310
> Baltimore, Maryland  21202
> 410-659-6139
> =======================================
>> biocLite("graph")
> Running biocinstall version 2.2.7 with R version 2.7.0 Your version of R
> requires version 2.2 of BioConductor.
> trying URL
> 'http://bioconductor.org/packages/2.2/bioc/bin/windows/contrib/2.7/graph
> _1.17.17.zip'
> Content type 'application/zip' length 811763 bytes (792 Kb) opened URL
> downloaded 792 Kb
>
> package 'graph' successfully unpacked and MD5 sums checked
>
> The downloaded packages are in
>         C:\Documents and Settings\KZEMBOWE\Local
> Settings\Temp\RtmpLl91qQ\downloaded_packages
> updating HTML package descriptions
>
> <snip installing SNAData and RBGL>
>
>> library("graph")
>> ?degree
> Error in
> print.help_files_with_topic("C:/R/R-2.7.0/library/graph/chm/graph-class"
> ) : 
>   CHM file could not be displayed
>> help("degree", package="graph")
> Error in
> print.help_files_with_topic("C:/R/R-2.7.0/library/graph/chm/graph-class"
> ) : 
>   CHM file could not be displayed
>> sessionInfo()
> R version 2.7.0 (2008-04-22) 
> i386-pc-mingw32 
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
>
> other attached packages:
> [1] SNAData_1.8.0 graph_1.17.17
>
> loaded via a namespace (and not attached):
> [1] cluster_1.11.10 tools_2.7.0    
>> 
>
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M2 B169
Phone: (206) 667-2793