[BioC] Bioconductor and R 2.7

Herve Pages hpages at fhcrc.org
Tue Apr 29 20:41:34 CEST 2008


Herve Pages wrote:
[...]
> For BioC package, this should be done with biocLite(), which is the easy 
> and
> safe way to do it. Other methods can work if you know what you are doing.
> E.g. using update.packages() might work, provided that you use the proper
> repositories for BioC 2.2. This can be achieved with:
> 
>   > source("http://bioconductor.org/biocLite.R")
>   > biocinstallRepos()
>   [1] "http://bioconductor.org/packages/2.2/bioc"
>   [2] "http://bioconductor.org/packages/2.2/data/annotation"
>   [3] "http://bioconductor.org/packages/2.2/data/experiment"
>   [4] "http://bioconductor.org/packages/2.2/extra"
>   [5] "http://cran.fhcrc.org"
>   > install.packages(rep=biocinstallRepos(), ask=FALSE)
       ^^^^^^^
       update.packages(rep=biocinstallRepos(), ask=FALSE)

oops...

H.



More information about the Bioconductor mailing list