[BioC] plotDensities

[Melissa Morine]

Hi Francesco,

I haven't used these plots much, but I don't think there's a way to do
this within the plotDensities function.  An easy solution, though, is to
modify it.  Just open the function in the text editor and modify the
internal matplot function, as well as the corresponding input variables.
 I tried that, and it seems to work Ok.

Melissa



----- Original Message -----
From: Francesco Strozzi <francesco.strozzi at gmail.com>
Date: Tuesday, April 8, 2008 11:30 am
Subject: [BioC] plotDensities
To: bioconductor at stat.math.ethz.ch

> Hi all,
> 
> is there a way to pass plot parameters, such as main, title, xlim, 
> ylim and
> so on, to the plotDensities function of the Limma package?
> I'm trying to pass this parameters but I always get an error:
> 
> > plotDensities(RG,main="Raw Data")
> Error in plotDensities(RG, main = "Raw Data") :
>  unused argument(s) (main = "Raw Data")
> > plotDensities(RG,xlim=c(1,2))
> Error in plotDensities(RG, xlim = c(1, 2)) :
>  unused argument(s) (xlim = c(1, 2))
> 
> The same appens using other common plot parameters.
> Any suggestion?
> 
> Thanks
> 
> -- 
> 
> Francesco
> 
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> 
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