[BioC] a question about exonmap

[Crispin Miller]

Hi,
It is built by searching all the probes on the array against the entire genome to generate annotation data that is then placed alongside Ensembl. There are functions to select or exclude probesets according to whether they hit introns, intergenic regions or exons -- so I guess it's considering the full set, but allowing you to filter according to the probeset target region's Ensembl annotation... There's a longer description in the paper.

crispin





-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch on behalf of Xin Zheng
Sent: Thu 4/24/2008 11:06 PM
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] a question about exonmap
 
Hi All,

exonmap uses ensembl database to map probesets and genes. My question
is which meta file of Affy it's equivalent to, core, extend or full?
Appreciate your answers.

Spiral

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