[BioC] How to get all genes in the summary table of siggenes SAM
Wayne Xu
wxu at msi.umn.edu
Mon Apr 28 22:15:17 CEST 2008
Hello,
Is there a way to get all genes' info in the SAM result table?
sam.out <- sam(samples.mat,cl,method="d.stat",rand=123,p0=0.95);
sum.table<-summary(sam.out,0,ll=F,file = "result.csv",sep=",",quote=F);
Error in stats.cal(object at d, object at d.bar, object at vec.false, object at p0, :
delta must be larger than 0.
If I put the delta number larger than 0, I cannot get all genes. The
genes whose FDR is close to 1 is filtered out. But I need all info for
all genes for further process.
I found the stats.cal.R code, but don't know how to make it work,
Thanks in advance,
Wayne
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