April 2009 Archives by date

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Starting: Wed Apr 1 00:08:35 CEST 2009
Ending: Thu Apr 30 22:38:46 CEST 2009
Messages: 441

• [BioC] Beadarray error: comparison of types not implemented   Martin Morgan
• [BioC] Limma: NA handling in contrasts.fit   Gordon K Smyth
• [BioC] Lumi normalization and VST help   Christina Markunas
• [BioC] Lumi normalization and VST help   Paul Leo
• [BioC] Problem in downloading GSE   Harpreet Saini
• [BioC] Compilation or syntax error in IRanges sort_util.c package   Michael Dondrup
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] [Fwd: [biocore] Rgraphviz on 64bit systems]   Robert Gentleman
• [BioC] AnnotationDbi problem.   Marcus Gry
• [BioC] AnnotationDbi problem.   Marc Carlson
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] vacancy postdoc or PhD in the Netherlands   Hendriks, M.
• [BioC] [R] easier way to print heatmap on multiple pages?   Yannick Wurm
• [BioC] Limma design: paired samples, batch effect   John Burger
• [BioC] LASR2009: Registration is now open   A Gusnanto
• [BioC] RMA implemented in oligo package vs affy package   heyi xiao
• [BioC] Compilation or syntax error in IRanges sort_util.c package   Hervé Pagès
• [BioC] RMA implemented in oligo package vs affy package   heyi xiao
• [BioC] MEDME for MeDIP on Affymetrix promoter arrays   Adrian Johnson
• [BioC] RMA implemented in oligo package vs affy package   Mark Robinson
• [BioC] Mfuzz package   dorothyc
• [BioC] tilingArray: error message   Wolfgang Huber
• [BioC] Summarization of cDNA microarray data   Boyke Bunk
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Summarization of cDNA microarray data   Sean Davis
• [BioC] maNormScale() equivalent for scale-normalizing AffyBatch objects   Chiara
• [BioC] hyperGTest, different Results using different annotation packages   Wiebke Iffert
• [BioC] Mfuzz package   James W. MacDonald
• [BioC] possible bug in getBM{biomaRt}   Teresa Colombo
• [BioC] possible bug in getBM{biomaRt}   Rhoda Kinsella
• [BioC] MEDME for MeDIP on Affymetrix promoter arrays   mattia pelizzola
• [BioC] hyperGTest, different Results using different annotation packages   Marc Carlson
• [BioC] Question about Rgraphviz   Florian Hahne
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] possible bug in getBM{biomaRt}   Wolfgang Huber
• [BioC] CISP'09-BMEI'09: Submission Deadline 20 April   CISP'09-BMEI'09
• [BioC] ChrMapHyperGParams and linearMTest in Category   Daren Tan
• [BioC] Limma design: paired samples, batch effect   Gordon K Smyth
• [BioC] Help me understand org.Hs.eg.db   Daren Tan
• [BioC] Help me understand org.Hs.eg.db   Christof Winter
• [BioC] Up- or down- regulated pathways or GO terms?   ss
• [BioC] Message From Egg Bank...   Egg Bank
• [BioC] 24h Pillen Online einkaufen   Adrienne
• [BioC] hyperGTest, different Results using different annotation packages   Wiebke Iffert
• [BioC] KEGG analysis   Daniel Brewer
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] KEGG analysis   Daniel Brewer
• [BioC] possible bug in getBM{biomaRt}   Rhoda Kinsella
• [BioC] Online Banking Update   Abbey National Plc
• [BioC] possible bug in getBM{biomaRt}   Wolfgang Huber
• [BioC] KEGG analysis   Florian Hahne
• [BioC] Help me understand org.Hs.eg.db   Marc Carlson
• [BioC] Up- or down- regulated pathways or GO terms?   Marc Carlson
• [BioC] Up- or down- regulated pathways or GO terms?   michael watson (IAH-C)
• [BioC] Up- or down- regulated pathways or GO terms?   Narendra Kaushik
• [BioC] Masking feature in rma analysis   Khan, Sohail
• [BioC] function approximation   carol white
• [BioC] HuGene-1_0-st-v1.r4.pgf   Martin Morgan
• [BioC] function approximation   Naomi Altman
• [BioC] HuGene-1_0-st-v1.r4.pgf   Mayte Suarez-Farinas
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] HuGene-1_0-st-v1.r4.pgf   Martin Morgan
• [BioC] ChrMapHyperGParams and linearMTest in Category   Daren Tan
• [BioC] flowCore / flowViz: densityplot of FCS file without time channel   Johannes Rainer
• [BioC] Up- or down- regulated pathways or GO terms?   Paolo Sonego
• [BioC] Is retrieving exon sequences with biomaRt a random process?   Straubhaar, Juerg
• [BioC] anyway to speed up anova on every row of a 280k-row matrix   Zheng, Xin (NIH) [C]
• [BioC] flowCore / flowViz: densityplot of FCS file without time channel   Florian Hahne
• [BioC] anyway to speed up anova on every row of a 280k-row matrix   Kasper Daniel Hansen
• [BioC] anyway to speed up anova on every row of a 280k-row matrix   Robert Gentleman
• [BioC] ChrMapHyperGParams and linearMTest in Category   Marc Carlson
• [BioC] Help me understand org.Hs.eg.db   Hervé Pagès
• [BioC] Help me understand org.Hs.eg.db   Hervé Pagès
• [BioC] HuGene-1_0-st-v1.r4.pgf   cstrato
• [BioC] BioC2009 Conference?   Michal Blazejczyk
• [BioC] BioC2009 Conference?   Robert Gentleman
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] xps and RMA   Mayte Suarez-Farinas
• [BioC] library xps   carissimo at tigem.it
• [BioC] How to check if gene name is an alias or misspelt   Daniel Brewer
• [BioC] How to check if gene name is an alias or misspelt   Sean Davis
• [BioC] library xps   cstrato
• [BioC] xps and RMA   cstrato
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] "Testing" the connection of getBM() ?   G M
• [BioC] "Testing" the connection of getBM() ?   Wolfgang Huber
• [BioC] Der neue Status - neue Aussichten   Nicolasa Maid
• [BioC] Introductory BioC Course 27-29 April 09: Analyzing Microarray Experiments   Patrick Aboyoun
• [BioC] changing gpr files?   Jenny Drnevich
• [BioC] changing gpr files?   Furge, Kyle
• [BioC] April R/S+ Courses: Back2back (1) R/S+ Fundamentals and (2) R/S-Plus Advanced Programming. in San Francisco and New York City   Sue Turner
• [BioC] Exon Array analysis   Junjie Guo
• [BioC] Exon Array analysis   Sean Davis
• [BioC] Exon Array analysis   Mark Robinson
• [BioC] The joint EMBL/Affymetrix workshop on whole transcript microarray data analysis   EMBL Courses & Conferences
• [BioC] Bioconductor Digest, Vol 74, Issue 7   vasantika s
• [BioC] Exon Array analysis   Narendra Kaushik
• [BioC] The joint EMBL/Affymetrix workshop on whole transcript microarray data analysis   EMBL Courses & Conferences
• [BioC] Bioconductor Digest, Vol 74, Issue 7   Christof Winter
• [BioC] stuck with creating CDF file for Affymetrix yeast tiling array.   Karthikeyan Sivaraman
• [BioC] stuck with creating CDF file for Affymetrix yeast tiling array.   Marc Carlson
• [BioC] Dent ists Database in the USA   shaken
• [BioC] HuGene annotation and htmls   Mayte Suarez-Farinas
• [BioC] HuGene annotation and htmls   cstrato
• [BioC] HuGene annotation and htmls   Marc Carlson
• [BioC] How to go from affymetrix to Ensembl transcript IDs   Peter Robinson
• [BioC] How to go from affymetrix to Ensembl transcript IDs   Sean Davis
• [BioC] How to go from affymetrix to Ensembl transcript IDs   Steve Lianoglou
• [BioC] BioC2009 Conference Registration Open   Patrick Aboyoun
• [BioC] How to check if gene name is an alias or misspelt   Gordon K Smyth
• [BioC] Exon Array analysis   rcaloger
• [BioC] HuGene annotation and htmls   Mayte Suarez-Farinas
• [BioC] HuGene annotation and htmls   James W. MacDonald
• [BioC] HuGene annotation and htmls   Mayte Suarez-Farinas
• [BioC] HuGene annotation and htmls   cstrato
• [BioC] How to check if gene name is an alias or misspelt   Hervé Pagès
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] Example in SLqPCRdata package   Daren Tan
• [BioC] Is retrieving exon sequences with biomaRt a random process?   Wolfgang Huber
• [BioC] Error in pamr.predict   Richard Yanicky
• [BioC] flowViz Plots Gate Outline and grid.newpage()/viewport Issue   Aric Gregson
• [BioC] flowViz Plots Gate Outline and grid.newpage()/viewport Issue   Florian Hahne
• [BioC] flowViz Plots Gate Outline and grid.newpage()/viewport Issue   Aric Gregson
• [BioC] flowViz Plots Gate Outline and grid.newpage()/viewport Issue   Florian Hahne
• [BioC] Les associations pour developper vos affaires pour bioconductor   joassociation.biz
• [BioC] Error in pamr.predict   Hervé Pagès
• [BioC] How to run bioHMM on Affymetrix data?   Stacey Burrows
• [BioC] RGraphviz   Sim, Fraser
• [BioC] RGraphviz   Florian Hahne
• [BioC] Differential anlaysis (limma)   Wei Shi
• [BioC] How to run bioHMM on Affymetrix data?   J.Oosting at lumc.nl
• [BioC] error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]   Massimo Pinto
• [BioC] time course analysis using LIMMA   Assa Yeroslaviz
• [BioC] reading binary .CEL files in MACOSX   Martino Barenco
• [BioC] RGraphviz   Sim, Fraser
• [BioC] Problem with subset in beadarray   Julien Bauer
• [BioC] question about normalization of Nimblegen expresssion array   xiao wu
• [BioC] error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]   Patrick Aboyoun
• [BioC] error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]   Massimo Pinto
• [BioC] error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]   Richard Pearson
• [BioC] error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]   Patrick Aboyoun
• [BioC] time course analysis using LIMMA   Wei Shi
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Visualise KEGG pathway and highlight genes   Daniel Brewer
• [BioC] Visualise KEGG pathway and highlight genes   Saroj K Mohapatra
• [BioC] Visualise KEGG pathway and highlight genes   Saroj K Mohapatra
• [BioC] Visualise KEGG pathway and highlight genes   Marc Carlson
• [BioC] HuGene annotation and htmls   Marc Carlson
• [BioC] HuGene annotation and htmls   cstrato
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] Mapping chromosome and nucleotide position to gene name   Steven McKinney
• [BioC] Mapping chromosome and nucleotide position to gene name   Steve Lianoglou
• [BioC] PieGlyph - labels do not show   Sim, Fraser
• [BioC] PieGlyph - labels do not show   Sim, Fraser
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Kavitha Venkatesan
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Sean Davis
• [BioC] Mapping chromosome and nucleotide position to gene name   Steven McKinney
• [BioC] RGraphviz   Florian Hahne
• [BioC] PieGlyph - labels do not show   Florian Hahne
• [BioC] Retrieving KEGG pathway diagrams via KEGGSOAP   Daren Tan
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Saroj K Mohapatra
• [BioC] Retrieving KEGG pathway diagrams via KEGGSOAP   Saroj K Mohapatra
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Martin Morgan
• [BioC] KEGGgraph, error   Markus Schmidberger
• [BioC] KEGGgraph, error   Jitao (David) Zhang
• [BioC] Visualise KEGG pathway and highlight genes   Jitao David Zhang
• [BioC] KEGGgraph, error   Jitao Zhang
• [BioC] categorical and numeric factors   Paco Recca
• [BioC] categorical and numeric factors   Sean Davis
• [BioC] Retrieving KEGG pathway diagrams via KEGGSOAP   Daren Tan
• [BioC] Visualise KEGG pathway and highlight genes   Georg Otto
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Gene symbol to KEGG gene ids   Daniel Brewer
• [BioC] Visulising KEGG pathways using KEGGSOAP - example code   michael watson (IAH-C)
• [BioC] Gene symbol to KEGG gene ids   michael watson (IAH-C)
• [BioC] Visualise KEGG pathway and highlight genes   Paolo Sonego
• [BioC] Visualise KEGG pathway and highlight genes   Daren Tan
• [BioC] Gene symbol to KEGG gene ids   Daniel Brewer
• [BioC] Gene symbol to KEGG gene ids   Daren Tan
• [BioC] Gene symbol to KEGG gene ids   michael watson (IAH-C)
• [BioC] Unable to install KEGGgraph   anupam sinha
• [BioC] Re : "Testing" the connection of getBM() ?   G M
• [BioC] RGraphviz   Sim, Fraser
• [BioC] Unable to install KEGGgraph   Wolfgang Huber
• [BioC] Re : "Testing" the connection of getBM() ?   Caroline
• [BioC] Retrieving KEGG pathway diagrams via KEGGSOAP   Paolo Sonego
• [BioC] KEGG pathway IDs ,issing   Daniel Brewer
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] Gene symbol to KEGG gene ids   Marc Carlson
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Kavitha Venkatesan
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Martin Morgan
• [BioC] evaluating a character string as a variable name in an ExpressionSet object   Kavitha Venkatesan
• [BioC] KEGG pathway IDs ,issing   Marc Carlson
• [BioC] Visualize KEGG pathway   Tim Smith
• [BioC] Visualize KEGG pathway   Saroj K Mohapatra
• [BioC] Visualize KEGG pathway   michael watson (IAH-C)
• [BioC] cdna normalization problem   samaneh asgari
• [BioC] cdna normalization problem   Sean Davis
• [BioC] PFAM analysis packages?   Paul Evans
• [BioC] RGraphviz   Sim, Fraser
• [BioC] building enzyme centric metabolic network   anupam sinha
• [BioC] building enzyme centric metabolic network   Saroj K Mohapatra
• [BioC] limma and 2-array divided probe sets   Jorrit Boekel
• [BioC] Gene symbol to KEGG gene ids   Daniel Brewer
• [BioC] limma and 2-array divided probe sets   Wolfgang Huber
• [BioC] RGraphviz   Florian Hahne
• [BioC] How to get a development version of a package?   Daniel Brewer
• [BioC] How to get a development version of a package?   Daniel Brewer
• [BioC] How to get a development version of a package?   Sean Davis
• [BioC] How to get a development version of a package?   Robert Gentleman
• [BioC] building enzyme centric metabolic network   Martin Morgan
• [BioC] building enzyme centric metabolic network   Saroj Mohapatra
• [BioC] FDR control in conditional Hypergeometric test   Tarca, Adi
• [BioC] Le site Web de votre bien immobilier pour bioconductor   ymmoo.biz
• [BioC] Dentists Directory in America   Pickett councilman
• [BioC] KEGGgraph package: KGML files working again   Jitao David Zhang
• [BioC] KEGGgraph package: KGML files working again   Markus Schmidberger
• [BioC] How to get a development version of a package?   Daniel Brewer
• [BioC] Bioconductor 2.4 is released   Patrick Aboyoun
• [BioC] limma: duplicates handling   Andres Pinzon
• [BioC] R graphs: all paths lengths between two nodes in a directed graph   Victoria V Plamadeala
• [BioC] beadarraySNP and GenomeStudio report file   Christian Ruckert
• [BioC] R graphs: all paths lengths between two nodes in a directed graph   Li Long
• [BioC] limma: duplicates handling   James W. MacDonald
• [BioC] limma: duplicates handling   Andres Pinzon
• [BioC] limma: duplicates handling   James W. MacDonald
• [BioC] limma: duplicates handling   Jenny Drnevich
• [BioC] expresso: performing RMA on NON-Affy data?   J.delasHeras at ed.ac.uk
• [BioC] limma: duplicates handling   Andres Pinzon
• [BioC] Help needed: Beadarray   Na, Jie
• [BioC] GO.db constants and oneGOgraph   Karin Lagesen
• [BioC] expresso: performing RMA on NON-Affy data?   James W. MacDonald
• [BioC] GO.db constants and oneGOgraph   James W. MacDonald
• [BioC] Best way to find genes that represent a group   Daniel Brewer
• [BioC] limma: duplicates handling   Jenny Drnevich
• [BioC] limma: duplicates handling   Andres Pinzon
• [BioC] Best way to find genes that represent a group   Sean Davis
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   Tipney, Hannah
• [BioC] Mfuzz plot -pdf   dorothyc
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   James W. MacDonald
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   Thomas Hampton
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   James W. MacDonald
• [BioC] smooth correlation from genespring   Duhaime Johanne
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   Marc Carlson
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   Tipney, Hannah
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   James MacDonald
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   Tipney, Hannah
• [BioC] R graphs: all paths lengths between two nodes in a directed graph   Victoria V Plamadeala
• [BioC] R graphs: all paths lengths between two nodes in a directed graph   Robert Gentleman
• [BioC] (no subject)   Ashwin Kumar
• [BioC] expresso: performing RMA on NON-Affy data?   J.delasHeras at ed.ac.uk
• [BioC] [R] easier way to print heatmap on multiple pages?   Julian Lee
• [BioC] EBImage_2.6.0/R2.8.1 installation problems   Bernd Jagla
• [BioC] seeking help to remove outliers in normalized data   Ashwin Kumar
• [BioC] seeking help to remove outliers in normalized data   Vincent Carey
• [BioC] assistance to understand MEDME   Ashwin Kumar
• [BioC] EBImage_2.6.0/R2.8.1 installation problems   Gregoire Pau
• [BioC] expresso: performing RMA on NON-Affy data?   James W. MacDonald
• [BioC] EBImage_2.6.0/R2.8.1 installation problems   Bernd Jagla
• [BioC] Mfuzz plot -pdf   James W. MacDonald
• [BioC] expresso: performing RMA on NON-Affy data?   J.delasHeras at ed.ac.uk
• [BioC] Script for filtering   Alberto Goldoni
• [BioC] finding GO terms that are close in the GO graph   Karin Lagesen
• [BioC] Script for filtering   James W. MacDonald
• [BioC] R: Script for filtering   Alberto Goldoni
• [BioC] STdev after eBayes   Giulio Di Giovanni
• [BioC] flow Installation Problems   John Campbell
• [BioC] R: Script for filtering   James W. MacDonald
• [BioC] expresso: performing RMA on NON-Affy data?   Kasper Daniel Hansen
• [BioC] GoStats - getting genes from categories   Adrian Johnson
• [BioC] Appropriate Probe annotation for HT-HGU133A chips   Marc Carlson
• [BioC] GoStats - getting genes from categories   James W. MacDonald
• [BioC] crlmm - computeCopynumber error   Christian Ruckert
• [BioC] flow Installation Problems   Florian Hahne
• [BioC] Bioc 2.4 biocLite() install error   Elliot Kleiman
• [BioC] qc in simpleaffy   Mayte Suarez-Farinas
• [BioC] Bioc 2.4 biocLite() install error   Keith Satterley
• [BioC] expresso: performing RMA on NON-Affy data?   Mark Robinson
• [BioC] sample size for microarray experiments having 2 factors with one random effect   shirley zhang
• [BioC] Bioc 2.4 biocLite() install error   Elliot Kleiman
• [BioC] sample size for microarray experiments having 2 factors with one random effect   Naomi Altman
• [BioC] Bioc 2.4 biocLite() install error   Martin Morgan
• [BioC] sample size for microarray experiments having 2 factors with one random effect   shirley zhang
• [BioC] qc in simpleaffy   Martin Morgan
• [BioC] expresso: performing RMA on NON-Affy data?   Robert Castelo
• [BioC] How to obtain a CDF file   Elsa Aguera
• [BioC] crlmm - computeCopynumber error   Christian Ruckert
• [BioC] How to obtain a CDF file   Mark Robinson
• [BioC] Interaction estimation i R for Conjoint Analysis   Marcin
• [BioC] expresso: performing RMA on NON-Affy data?   James W. MacDonald
• [BioC] expresso: performing RMA on NON-Affy data?   Robert Castelo
• [BioC] KEGGSOAP (installation?) problem   Paolo Sonego
• [BioC] sample size for microarray experiments having 2 factors with one random effect   Naomi Altman
• [BioC] How to obtain a CDF file   Steve Lianoglou
• [BioC] Bioconductor package to map probe set ids from one chip to another chip   Andrew Yee
• [BioC] Problems with EBImage installation   Perry_D_Haaland at bd.com
• [BioC] Finding transcription factors controlling hk1 gene In timecourse experiment   Peter Smith
• [BioC] Problem loading data for Agi4x44PreProcess   Bernal-Mizrachi, Leon
• [BioC] Finding transcription factors controlling hk1 gene In timecourse experiment   Martino Barenco
• [BioC] Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList.   Massimo Pinto
• [BioC] KEGGSOAP (installation?) problem   Marc Carlson
• [BioC] Bioconductor package to map probe set ids from one chip to another chip   Marc Carlson
• [BioC] Bioconductor package to map probe set ids from one chip to another chip   Andrew Yee
• [BioC] Bioconductor package to map probe set ids from one chip to another chip   Marc Carlson
• [BioC] Bioconductor package to map probe set ids from one chip to another chip   Marc Carlson
• [BioC] flowClust results in subset filters   Bastian Angermann
• [BioC] CISP'09-BMEI'09 Final Call: Extended Deadline 20 May   CISP'09-BMEI'09
• [BioC] Visualizing KEGG pathways   Tim Smith
• [BioC] (no subject)   Pete Shepard
• [BioC] (no subject)   Robert Gentleman
• [BioC] (no subject)   Sean Davis
• [BioC] (no subject)   Marc Carlson
• [BioC] (no subject)   Thomas Hampton
• [BioC] (no subject)   Sean Davis
• [BioC] Visualizing KEGG pathways   Marc Carlson
• [BioC] expresso: performing RMA on NON-Affy data?   James W. MacDonald
• [BioC] Visualizing KEGG pathways   Tim Smith
• [BioC] Bioconductor package to map probe set ids from one chip to another chip   Hattem, Gaye
• [BioC] assistance to understand MEDME   mattia pelizzola
• [BioC] Bioc 2.4 biocLite() install error   Elliot Kleiman
• [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'   Philip Lijnzaad
• [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'   Kasper Daniel Hansen
• [BioC] expresso: performing RMA on NON-Affy data?   Kasper Daniel Hansen
• [BioC] Problems with EBImage installation   Gregoire Pau
• [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'   John Zhang
• [BioC] Visualizing KEGG pathways   Saroj K Mohapatra
• [BioC] expresso: performing RMA on NON-Affy data?   Laurent Gautier
• [BioC] combining GSA and lmFit   Dick Beyer
• [BioC] flowClust results in subset filters   Florian Hahne
• [BioC] expresso: performing RMA on NON-Affy data?   Robert Castelo
• [BioC] KEGGSOAP (installation?) problem   Paolo Sonego
• [BioC] expresso: performing RMA on NON-Affy data?   Laurent Gautier
• [BioC] EBImage problem - requested image not found or could not be loaded   Paolo Sonego
• [BioC] Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)   Massimo Pinto
• [BioC] How to determine if clinical variables are responsible for gene expression with limma   Jon Manning
• [BioC] EBImage problem - requested image not found or could not be loaded   Gregoire Pau
• [BioC] expresso: performing RMA on NON-Affy data?   James W. MacDonald
• [BioC] EBImage problem - requested image not found or could not be loaded   Paolo Sonego
• [BioC] Help needed: Beadarray   Mark Dunning
• [BioC] crlmm - computeCopynumber error   Robert Scharpf
• [BioC] Yet another nested design in limma   Paolo Innocenti
• [BioC] Breaking the "most genes not differentially expressed" assumption   Paolo Innocenti
• [BioC] Breaking the "most genes not differentially expressed" assumption   Sean Davis
• [BioC] annotate incompatible with RdbiPgSQL !?!   Philip Lijnzaad
• [BioC] annotate incompatible with RdbiPgSQL !?!   Philip Lijnzaad
• [BioC] Breaking the "most genes not differentially expressed" assumption   Paolo Innocenti
• [BioC] annotate incompatible with RdbiPgSQL !?!   James W. MacDonald
• [BioC] annotate incompatible with RdbiPgSQL !?!   Robert Gentleman
• [BioC] avereps function   Erika Melissari
• [BioC] Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)   Pedro Lopez-Romero
• [BioC] Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)   Pedro Lopez-Romero
• [BioC] Genome Graphs question   Paul Leo
• [BioC] combining GSA and lmFit   Gordon K Smyth
• [BioC] Den Tists Directory in the USA   Anna Carrillo
• [BioC] Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)   Massimo Pinto
• [BioC] expresso: performing RMA on NON-Affy data?   Robert Castelo
• [BioC] avereps function   Erika Melissari
• [BioC] annotate incompatible with RdbiPgSQL !?!   Philip Lijnzaad
• [BioC] avereps function   Claus-Jürgen Scholz
• [BioC] Pearson Correlation & log transformed data.   Paul Geeleher
• [BioC] Problem loading data for Agi4x44PreProcess   Bernal-Mizrachi, Leon
• [BioC] GenomeGraphs   Kauer Max
• [BioC] avereps function   Erika Melissari
• [BioC] Problem loading data for Agi4x44PreProcess   Pedro Lopez-Romero
• [BioC] KEGGSOAP problem   Glazko, Galina
• [BioC] KEGGSOAP problem   Vincent Carey
• [BioC] KEGGSOAP problem   Martin Morgan
• [BioC] KEGGSOAP problem   Glazko, Galina
• [BioC] KEGGSOAP problem   Patrick Aboyoun
• [BioC] Genome Graphs question   Wolfgang Huber
• [BioC] Breaking the "most genes not differentially expressed" assumption   Wolfgang Huber
• [BioC] combining GSA and lmFit   Dick Beyer
• [BioC] qc in simpleaffy   Mayte Suarez-Farinas
• [BioC] qc in simpleaffy   Robert Gentleman
• [BioC] GenomeGraphs   Paul Leo
• [BioC] combining GSA and lmFit   Gordon K Smyth
• [BioC] Probe IDs from Sentrix chips not appearing in Human annotation file   Nikhil Joshi
• [BioC] installation of Rgraphviz   ravi
• [BioC] Breaking the "most genes not differentially expressed" assumption   Paolo Innocenti
• [BioC] avereps function   Claus-Jürgen Scholz
• [BioC] Problems with EBImage installation   Gregoire Pau
• [BioC] installation of Rgraphviz   ravi
• [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'   Ben Madin
• [BioC] EBImage installation   Bernd Jagla
• [BioC] biomaRt error   Straubhaar, Juerg
• [BioC] EBImage installation   Gregoire Pau
• [BioC] biomaRt error   Rhoda Kinsella
• [BioC] EBImage installation   Bernd Jagla
• [BioC] crlmm and Illumina Infinium arrays   Christian Ruckert
• [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'   Robert Gentleman
• [BioC] expresso: performing RMA on NON-Affy data?   J.delasHeras at ed.ac.uk
• [BioC] installation of Rgraphviz   Sim, Fraser
• [BioC] combining GSA and lmFit   Dick Beyer
• [BioC] installation of Rgraphviz   Patrick Aboyoun
• [BioC] Probe IDs from Sentrix chips not appearing in Human annotation file   Marc Carlson
• [BioC] Extended draft paper submission: BCBGC-09 call for papers   John Edward
• [BioC] installation of Rgraphviz   Kasper Daniel Hansen
• [BioC] combining GSA and lmFit   Robert Gentleman
• [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'   Hervé Pagès
• [BioC] Two positions (PhD or PostDoc) in Berlin/Germany in biomedical data management and analysis   Ulf Leser
• [BioC] installation of Rgraphviz   Patrick Aboyoun
• [BioC] installation of Rgraphviz   Patrick Aboyoun
• [BioC] Probe IDs from Sentrix chips not appearing in Human annotation file   Mark Dunning
• [BioC] annotate incompatible with RdbiPgSQL !?!   Hervé Pagès
• [BioC] Rredland installation difficulties   Paul Shannon
• [BioC] EBImage_2.6.0/R2.8.1 installation problems   Hervé Pagès
• [BioC] Rredland installation difficulties   Patrick Aboyoun
• [BioC] crlmm and Illumina Infinium arrays   Matthew Ritchie
• [BioC] Rredland installation difficulties   Vincent Carey
• [BioC] EBImage Runtime Error;   Glazko, Galina
• [BioC] EBImage Runtime Error;   Gregoire Pau
• [BioC] Question regarding Affy SNP 5.0/BI_SNP arrays   Mayer, Claus-Dieter
• [BioC] Installation of hmyriB36   David Edwards
• [BioC] Installation of hmyriB36   Vincent Carey
• [BioC] EBImage Runtime Error;   Glazko, Galina
• [BioC] expresso: performing RMA on NON-Affy data?   Mark Robinson
• [BioC] Post Doc position, Berlin Germany   Paul Hammer
• [BioC] limma: analyzing randomized duplicate spots on Nimblegen array   Vishal Thapar
• [BioC] mget() error with NA values   Christian Kohler
• [BioC] Limma and ANOVA with repeated measures   Sharon
• [BioC] limma: analyzing randomized duplicate spots on Nimblegen array   Jenny Drnevich
• [BioC] mget() error with NA values   James W. MacDonald
• [BioC] installation of Rgraphviz   ravi
• [BioC] Difference between hgu133a.db and hgu133b.db   Thomas Hampton
• [BioC] installation of Rgraphviz   Sim, Fraser
• [BioC] Question regarding Affy SNP 5.0/BI_SNP arrays   Mayer, Claus-Dieter
• [BioC] mget() error with NA values   Christian Kohler
• [BioC] installation of Rgraphviz   ravi
• [BioC] installation of Rgraphviz   Sim, Fraser
• [BioC] installation of Rgraphviz   ravi
• [BioC] installation of Rgraphviz   ravi
• [BioC] Rredland installation difficulties   Paul Shannon
• [BioC] Question regarding Affy SNP 5.0/BI_SNP arrays   Williams, Alan
• [BioC] Installation of hmyriB36   Patrick Aboyoun
• [BioC] mget() error with NA values   Hervé Pagès
• [BioC] Rredland installation difficulties   Vincent Carey
• [BioC] P-values returned from siggenes's sam() function   Michal Blazejczyk
• [BioC] Difference between hgu133a.db and hgu133b.db   Marc Carlson
• [BioC] (no subject)   Pete Shepard
• [BioC] Multiple Platforms: Beyond Gene Symbols as Identifiers   Thomas Hampton
• [BioC] Multiple Platforms: Beyond Gene Symbols as Identifiers   Marc Carlson

Last message date: Thu Apr 30 22:38:46 CEST 2009
Archived on: Thu Apr 30 22:40:31 CEST 2009

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