[BioC] KEGGSOAP problem

[Patrick Aboyoun]

Galina,
I just updated the XML Windows binary package for R 2.9 in the 
bioconductor extra repository. You can now obtain it using

source("http://bioconductor.org/biocLite.R")
biocLite("XML")


Patrick


Martin Morgan wrote:
> Hi Galina --
>
> Looks like your XML package is out-of-date. You'll need to update it or
> all of your packages, following the instructions at
>
>   http://bioconductor.org/docs/install/
>
> Martin
>
> Glazko, Galina wrote:
>   
>> Dear all,
>>
>>  
>>
>> Last week I updated R to the version 2.9.0 and Bioconductor  to  the
>> version 2.4
>>
>> I am trying to install KEGGSOAP now but something strange happens:
>>
>>  
>>
>>     
>>> biocLite('KEGGSOAP')
>>>       
>> Running biocinstall version 2.4.10 with R version 2.9.0 
>> Your version of R requires version 2.4 of Bioconductor.
>> Warning: unable to access index for repository
>> http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9
>> trying URL
>> 'http://bioconductor.org/packages/2.4/bioc/bin/windows/contrib/2.9/KEGGS
>> OAP_1.18.0.zip'
>> Content type 'application/zip' length 104952 bytes (102 Kb)
>> opened URL
>> downloaded 102 Kb
>>
>> package 'KEGGSOAP' successfully unpacked and MD5 sums checked
>>
>> The downloaded packages are in
>>         C:\Documents and Settings\Galina\Local
>> Settings\Temp\RtmpIMZxc6\downloaded_packages
>> updating HTML package descriptions
>>
>>
>>
>> - so  the installation seems to be OK?
>>
>>  
>>
>>     
>>> library('KEGGSOAP')
>>>       
>> Error in inDL(x, as.logical(local), as.logical(now), ...) : 
>>   unable to load shared library
>> 'C:/PROGRA~1/R/R-29~1.0/library/XML/libs/XML.dll':
>>   LoadLibrary failure:  The specified module could not be found.
>>
>>
>> Error : .onLoad failed in 'loadNamespace' for 'XML'
>> Error: package/namespace load failed for 'KEGGSOAP'
>>
>>  
>>
>> Could someone point what is wrong?
>>
>> Thank you!
>>
>>  
>>
>> Best regards
>>
>> Galina
>>
>>  
>>
>>     
>>> sessionInfo()
>>>       
>> R version 2.9.0 (2009-04-17) 
>> i386-pc-mingw32 
>>
>>  
>>
>>  
>>
>>
>> 	[[alternative HTML version deleted]]
>>
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>>     
>
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