[BioC] KEGGSOAP problem

[Martin Morgan]

Hi Galina --

Looks like your XML package is out-of-date. You'll need to update it or
all of your packages, following the instructions at

  http://bioconductor.org/docs/install/

Martin

Glazko, Galina wrote:
> Dear all,
> 
>  
> 
> Last week I updated R to the version 2.9.0 and Bioconductor  to  the
> version 2.4
> 
> I am trying to install KEGGSOAP now but something strange happens:
> 
>  
> 
>> biocLite('KEGGSOAP')
> Running biocinstall version 2.4.10 with R version 2.9.0 
> Your version of R requires version 2.4 of Bioconductor.
> Warning: unable to access index for repository
> http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9
> trying URL
> 'http://bioconductor.org/packages/2.4/bioc/bin/windows/contrib/2.9/KEGGS
> OAP_1.18.0.zip'
> Content type 'application/zip' length 104952 bytes (102 Kb)
> opened URL
> downloaded 102 Kb
> 
> package 'KEGGSOAP' successfully unpacked and MD5 sums checked
> 
> The downloaded packages are in
>         C:\Documents and Settings\Galina\Local
> Settings\Temp\RtmpIMZxc6\downloaded_packages
> updating HTML package descriptions
> 
> 
> 
> - so  the installation seems to be OK?
> 
>  
> 
>> library('KEGGSOAP')
> Error in inDL(x, as.logical(local), as.logical(now), ...) : 
>   unable to load shared library
> 'C:/PROGRA~1/R/R-29~1.0/library/XML/libs/XML.dll':
>   LoadLibrary failure:  The specified module could not be found.
> 
> 
> Error : .onLoad failed in 'loadNamespace' for 'XML'
> Error: package/namespace load failed for 'KEGGSOAP'
> 
>  
> 
> Could someone point what is wrong?
> 
> Thank you!
> 
>  
> 
> Best regards
> 
> Galina
> 
>  
> 
>> sessionInfo()
> R version 2.9.0 (2009-04-17) 
> i386-pc-mingw32 
> 
>  
> 
>  
> 
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor