[BioC] Unable to install KEGGgraph

[Wolfgang Huber]

Dear Anupam Sinha

you need a more recent version of R, e.g. version 2.9,
which you can get from here: http://www.r-project.org

Then try again with

source("http://bioconductor.org/biocLite.R")
biocLite("KEGGgraph")

Best wishes
      Wolfgang

------------------------------------------------
Wolfgang Huber, EMBL, http://www.ebi.ac.uk/huber

anupam sinha ha scritto:
> Hi all,
>             I am unable to install "KEGGgraph" packages> It gives the
> following error :
> 
> *>     source("http://bioconductor.org/biocLite.R")
> Warning messages:
> 1: In safeSource() : Redefining ?biocinstall?
> 2: In safeSource() : Redefining ?biocinstallPkgGroups?
> 3: In safeSource() : Redefining ?biocinstallRepos?
>>     biocLite("KEGGgraph")
> Running biocinstall version 2.1.11 with R version 2.6.1
> Your version of R requires version 2.1 of BioConductor.
> Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
> dependencies,  :
>   argument 'lib' is missing: using
> '/home/anupam/R/i686-redhat-linux-gnu-library/2.6'
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, dependencies =
> dependencies,  :
>   package ?KEGGgraph? is not available
> *
> *> sessionInfo()
> R version 2.6.1 (2007-11-26)
> i686-redhat-linux-gnu
> 
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
> 
> attached base packages:
> [1] splines   tools     stats     graphics  grDevices utils     datasets
> [8] methods   base
> 
> other attached packages:
>  [1] ppiStats_1.4.1      ppiData_0.1.10      Rgraphviz_1.16.0
>  [4] YEAST_2.0.1         GOstats_2.4.0       Category_2.4.0
>  [7] genefilter_1.16.0   survival_2.34       RBGL_1.16.0
> [10] annotate_1.16.1     xtable_1.5-2        GO.db_2.0.2
> [13] AnnotationDbi_1.0.6 RSQLite_0.6-9       DBI_0.2-4
> [16] Biobase_1.16.3      graph_1.20.0        GO_2.0.1
> 
> loaded via a namespace (and not attached):
> [1] cluster_1.11.9  rcompgen_0.1-17
> *
> Can anyone help me out please ?
> 
> Regards,
> 
> Anupam Sinha
> 
> 	[[alternative HTML version deleted]]
> 
> 
> 
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