[BioC] EBImage_2.6.0/R2.8.1 installation problems

[Hervé Pagès]

Hi Bernd,

Bernd Jagla wrote:
[...]
> 
>> library(EBImage)
> 
>> f=system.file("images","lena.gif", package="EBImage")
> 
>> lena=readImage(f)
> 
> Warning message:
> 
> In .DoCall("lib_readImages", as.character(files), as.integer(colormode)) :
> 
>   requested image not found or could not be loaded
> 

lena.gif was added to EBImage in December 2008 (EBImage 2.7.9) and you are
using EBImage 2.6.0 so I doubt the documentation for your version of
EBImage is providing the above example.

Please always install with biocLite() and make sure you are always using
the current release of R + Bioconductor + EBImage (R 2.9.0 + BioC 2.4 +
EBImage 3.0.0). Older versions are not supported.

Cheers,
H.


[...]
> 
> additional information:
> 
>> sessionInfo()
> 
> R version 2.8.1 (2008-12-22) 
> 
> i386-pc-mingw32 
> 
>  
> 
> locale:
> 
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
> States.1252;LC_MONETARY=English_United
> States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
> 
>  
> 
> attached base packages:
> 
> [1] stats     graphics  grDevices utils     datasets  methods   base     
> 
>  
> 
> other attached packages:
> 
> [1] EBImage_2.6.0
> 
> 
>  
> 
> Gtk information:
> 
>  
> 
> pkg-config --cflags gtk+-2.0
> 
> -mms-bitfields -Ic:/gtk/include/gtk-2.0 -Ic:/gtk/lib/gtk-2.0/include
> -Ic:/gtk/include/atk-1.0 -Ic:/gtk/include/cairo -Ic:/gtk/include/p
> 
> ango-1.0 -Ic:/gtk/include/glib-2.0 -Ic:/gtk/lib/glib-2.0/include
> -Ic:/gtk/include/libpng12
> 
>  
> 
> (GTK+-bundle2.16.0-20090317_win32)
> 
>  
> 
> ImageMagick:
> 
> ImageMagick 6.5.1 Q16 (dll version)
> 
>  
> 
> When trying to open some tif files I get the following error message:
> 
> IMDisplayDoc function (DoReadImage) reported a warning.
> 
> Imdisplay.exe: Compression algorithm does not support random access. (.)
> tiff.c/TIFFErrors/324
> 
> Gifs, miff, PNG I can open.
> 
>  
> 
> But eventually I am actually interested in opening TIFF files .
> 
>  
> 
>  
> 
> Thanks for your kind help,
> 
>  
> 
>  
> 
> Bernd
> 
>  
> 
>  
> 
> 
> 
> 
> 
> Bernd Jagla
> Bioinformatician 
> 
> Institute Pasteur
> Plate-forme puces a ADN
> Genopole / Institut Pasteur
> 28 rue du Docteur Roux
> 75724 Paris Cedex 15
> France 
> 
> 
>  <mailto:bernd.jagla at pasteur.fr> bernd.jagla at pasteur.fr 
> 
> 
> tel: 
> 
>  
> <http://www.plaxo.com/click_to_call?lang=en&src=jj_signature&To=%2B33+%280%2
> 9+140+61+35+13&Email=berndjagla at yahoo.com> +33 (0) 140 61 35 13 
> 
>  
> 
>  
> 
>  
> 
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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