[BioC] HuGene-1_0-st-v1.r4.pgf

[Martin Morgan]

Hi Mayte --

Here's a different way to find things, see the 'Annotation Retrieval
with NetAffx' vignette in the AffyCompatible package for more details

> library(AffyCompatible)
> rsrc <- NetAffxResource(user="mtmorgan at fhcrc.org", password=password)
> pgf
affxType: pgf
affxDescription: Probe Group File
affxFile: AffxFile(1)
> affxUrl(affxFile(pgf)[[1]])[[1]]
.Data:
http://www.affymetrix.com/analysis/downloads/na27/wtgene/HuGene-1_0-st-v1.r4.pgf.zip
affxCompression: application/zip
affxCrc32:
affxSize: 14242053

Martin


Mayte Suarez-Farinas wrote:
> Hi,
> I am trying to use xps to work with HuGene 1.0
> I have already ROOT and xps and I am following
> their code to create the root scheme. The use of this packages are
> more laborious that the annotation "ways' for other affychip,
> but I am doing by best. For what I understand
> I have to download  HuGene-1_0-st-v1.r4.clf,HuGene-1_0-st- 
> v1.na28.hg18.transcript.csv
> and  HuGene-1_0-st-v1.r4.pgf form Affywebsite. I was able to find the  
> first two but not the
> last one. ie: HuGene-1_0-st-v1.r4.pgf
> 
> any help??
> 
> 
> scheme.hugene10stv1r3.na27 <- import.genome.scheme 
> ("Scheme_HuGene10stv1r4_na28",filedir=scmdir,
>                                paste(libdir,"HuGene-1_0-st- 
> v1.r4.clf",sep="/"),
>                                paste(libdir,"HuGene-1_0-st- 
> v1.r4.pgf",sep="/"),
>                                paste(anndir,"HuGene-1_0-st- 
> v1.na28.hg18.transcript.csv",sep="/"))
> 
> Mayte
> 	[[alternative HTML version deleted]]
> 
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