[BioC] P-values returned from siggenes's sam() function

Michal Blazejczyk michal.blazejczyk at mail.mcgill.ca
Thu Apr 30 19:45:25 CEST 2009


Hi everyone,

I have a fairly technical question.  We are calling the sam() function from packages siggenes:
  result <- sam( ...... )
and then getting the p-values like this:
  result at p.value

The Help for function sam() says that these are "raw, unadjusted p-values of the genes".

Does it mean an FDR function such as mt.rawp2adjp() from multtest can be safely used on these values?

Best,
Michal Blazejczyk
FlexArray Lead Developer



More information about the Bioconductor mailing list