[BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Kasper Daniel Hansen
khansen at stat.berkeley.edu
Sat Apr 25 17:02:37 CEST 2009
This is most likely a bug in RdbiPgSQL, related to more stringent
check of SET_VECTOR_ELT (C code) in R.
It is probably easy to fix, but I don't have access to a PostGres
database, so I would be unable to check.
Contact the maintainer and complain :)
On Apr 25, 2009, at 2:26 , Philip Lijnzaad wrote:
> Dear all,
> I'm having difficulty using RdbiPgSQL. This is using R 2.9.1,
> 1.18.0, both R client and server at 8.3.
> If I do
> I keep getting this:
> SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
> Calls: dbConnect ... dbConnectionInfo ->
> dbConnectionInfo.PgSQL.conn -> .Call
> This used to work fine under R 2.7
> I see that the RdbiPgSQL compiles properly, but is the actual
> against a real database really checked? In an ideal world this would
> be the
> case, as the current version is unusuable.
> This is very unfortunate, since we really rely on this code.
> Any suggestions are welcome.
> Philip Lijnzaad, PhD
> Holstege Genomics Laboratory
> Dept. of Biomedical Genetics
> University Medical Center (UMC), Utrecht
> Stratenum room 2.211 (on Mondays and Thursdays not in after 15.00)
> MSN chat (*NOT* email): philip_lijnzaad at hotmail.com
> P.O. Box 85060, 3508 AB Utrecht
> (Universiteitsweg 100, 3584 CG Utrecht)
> The Netherlands
> tel: +31 (0)8875 68464
> fax: +31 (0)8875 68479
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
More information about the Bioconductor