[BioC] GenomeGraphs

[Paul Leo]

  I had problem with that also, I ended up using the makeTestOverlay
(it's in the pdf and looks like this:

to <- makeTextOverlay("here is some text",xpos = 96133000, ypos = 0.5)
genomeAxis <- makeGenomeAxis(add53 = TRUE,add35=TRUE)
gdPlot(list(plusStrand,genomeAxis),overlay=c(to),add=TRUE)

Cheers



-----Original Message-----
From: Kauer Max <maximilian.kauer at ccri.at>
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] GenomeGraphs
Date: Tue, 28 Apr 2009 14:32:13 +0200

Hi 
when I replicate the example for exon array data in the GenomeGraphs vignette and set displayProbesets to TRUE then the names of the probesets and the lines that connect the intensity graph with the affy-genemodel are on top of each other. I wondered if the probeset names could be displayed above the intensity graph or how one in general can control the layout of the final graph.

Thanks!
Max

--------------------------------------
Max Kauer
CHILDREN'S CANCER RESEARCH INSTITUTE
St. Anna Kinderkrebsforschung e.V.
Zimmermannplatz 10, 1090 Wien, Austria

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