[BioC] library xps

[carissimo at tigem.it]

Dear all,

j'using library xps for Human Exon 1.0 ST array and when j create the root
scheme, ha heve the following:


Importing
</home/carissimo/HumExon/libraryfiles/HuEx-1_0-st-v2.r2/HuEx-1_0-st-v2.r2.clf>
as <HuEx-1_0-st-v2.cxy>...
   <6553600> records imported...Finished
New dataset <HuEx-1_0-st-v2> is added to Content...
Importing
</home/carissimo/HumExon/Annotation/HuEx-1_0-st-v2.na25.hg18.probeset.csv/HuEx-1_0-st-v2.na25.hg18.probeset.csv>
as <HuEx-1_0-st-v2.anp>...
   Number of probesets is <1425647>.
   <1425647> records read...Finished
   <1404858> records imported...Finished
   <1063119> exon annotations imported.
Importing
</home/carissimo/HumExon/libraryfiles/HuEx-1_0-st-v2.r2/HuEx-1_0-st-v2.r2.pgf>
as <HuEx-1_0-st-v2.scm>...
   Reading data from input file...
   Number of probesets is <1432143>.
   Note: Number of annotated probesets <1425647> is not equal to number of
probesets <1432143>.


Does someone know why?

Annamaria Carissimo


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